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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...atttgcttggtgtttcaataagaatgggcagtagatctggcttcgacttttgccgcttttgattgagtctgtcttaagaactgtcatgtgtgtgtatcagGAGAACAATTCAACTGTCTTCGTAGATAAAGGCGGGAGGAATTTGACCTAGAAACTTCAATTTCAGCCATCCGCTCATTTATCTTGTTCCCTTGCTCGTA

Basic information

species Physcomitrella patens
transcript PP1S69_70V6.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100389345|gb|BY971095.1|BY971095
EST:     TTAGAAATCGTCGTTAGATTCCGTACTGGCGGCGGTGGATATCCTCGTTG                         GAGAACAATTCAACTGTCTTCGTAGATAAAGGCGGGAGGAATTTGACCTAG
genomic: TTAGAAATCGTCGTTAGATTCCGTACTGGCGGCGGTGGATATCCTCGTTGgtaccgcttc ... tgtgtatcagGAGAACAATTCAACTGTCTTCGTAGATAAAGGCGGGAGGAATTTGACCTAG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acttttgccgcttttgattgagtctgtcttaagaactgtcatgtgtgtgtatcagGAGAACAATTCAACTGTCTTCGTAGATAAAGGCGGGAGGAATTTGACCTAGAAACTTCAATTTCAGCCATCCGCTCATTTATCTTGTTCCCTTGCTCGTA
           ttttgat  putative branch site (score: 4)
           ttttgatt  TA-rich tract