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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttgaaactcgtataattctatgagtctagttccatattgttacctgcctggggtttggacttcggtttttcctggaattccttaccaccgtaatttgcagGAGTCAACGCTGTAATTTTGCAACCGATTTTTGCATGGGATGAATCCAAGGGATGCTACTATCCAATTAG

Basic information

species Physcomitrella patens
transcript PP1S62_201V6.2
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162184820|gb|FC361122.1|FC361122
EST:     TGGTACTTTTCTGGGAGTACTAGAGAAGATTCCTTACTTGCGAAGCCTGG                         GAGTCAACGCTGTAATTTTGCAACCGATTTTTGCATGGGATGAATCCAAGG
genomic: TGGTACTTTTCTGGGAGTACTAGAGAAGATTCCTTACTTGCGAAGCCTGGgtgcgtccct ... taatttgcagGAGTCAACGCTGTAATTTTGCAACCGATTTTTGCATGGGATGAATCCAAGG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcctggggtttggacttcggtttttcctggaattccttaccaccgtaatttgcagGAGTCAACGCTGTAATTTTGCAACCGATTTTTGCATGGGATGAATCCAAGGGATGCTACTATCCAATTAG
                                 tccttac  putative branch site (score: 2)
                                             taattt  TA-rich tract