1 5' 3' | 2 5' 3' | 3 5' 3' |
gtaagatctcctacttttcttgtatgctgccagtatgcggggtgtaggagcaggtgggttgagtaatattctagataatcaagtgttaacaagttattttaaaaactactattgttattattattattattattattattattatcctttctagcgtattgattattgtcgtgaaacctgggcttttgaagCGACATAGAAGCAAAGATAAGGGAGGTGGAGACCTACGAGGACGACGAAGAAATCAAGGGCCAGCGTGTGGAGAAAGTCTTCAAGAGCCAATTCGAGCGA
species | Physcomitrella patens |
transcript | PP1S62_198V6.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AGGAGATTTGCGCATTCTGGACATGGGTCAACTGCTGACAATCAGATCAT CGACATAGAAGCAAAGATAAGGGAGGTGGAGACCTACGAGGACGACGAAGAEST: gi|162277369|gb|FC453175.1|FC453175
genomic: AGGAGATTTGCGCATTCTGGACATGGGTCAACTGCTGACAATCAGATCATgtaagatctc ... gcttttgaagCGACATAGAAGCAAAGATAAGGGAGGTGGAGACCTACGAGGACGACGAAGA
EST: AGGAGATTTGCGCATTCTGGACATGGGTCAACTGCTGACAATCAGATCAT CGACATAGAAGCAAAGATAAGGGAGGTGGAGACCTACGAGGACGACGAAGA
genomic: AGGAGATTTGCGCATTCTGGACATGGGTCAACTGCTGACAATCAGATCATgtaagatctc ... gcttttgaagCGACATAGAAGCAAAGATAAGGGAGGTGGAGACCTACGAGGACGACGAAGA
tattattatcctttctagcgtattgattattgtcgtgaaacctgggcttttgaagCGACATAGAAGCAAAGATAAGGGAGGTGGAGACCTACGAGGACGACGAAGAAATCAAGGGCCAGCGTGTGGAGAAAGTCTTCAAGAGCCAATTCGAGCGA
tattgat putative branch site (score: 1)
ctttt putative PPT
tattgattatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagatctcctacttttcttgtatgctgccagtatgcggggtgtaggagcaggtgggttgagtaatattctagataatcaagtgttaacaagttattttaaaaactactattgttattattattattattattattattattatcctttctagcgtattgattattgtcgtgaaacctgggcttttgaagCGACATAGAAGCAAAGATAAGGGAGGTGGAGACCTACGAGGACGACGAAGAAATCAAGGGCCAGCGTGTGGAGAAAGTCTTCAAGAGCCAATTCGAGCGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA