1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
AGGAATTAAAGCCCGATCGTTGAAATCTATTAAATGATCCAACGAAGGACGAGACAGCTAAAGGCGGCCAAGAAAATTCTAATCTATCTATAGTCAATCGgtaatgctgcctagtcttcgtggttttaaacgctttgttgggcacagtgcaatgcttcaatcctatacttgtgtgcggtgtgtttatgcctgtgtttgtg...
species | Physcomitrella patens |
transcript | PP1S62_186V6.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: GAGACAGCTAAAGGCGGCCAAGAAAATTCTAATCTATCTATAGTCAATCG ACTATCAGAAGAGGACATGCACTCGCCGAAACTTCACTGAAATTATGGCTGEST: gi|37845573|gb|BJ603581.1|BJ603581
genomic: GAGACAGCTAAAGGCGGCCAAGAAAATTCTAATCTATCTATAGTCAATCGgtaatgctgc ... ttctttgcagACTATCAGAAGAGGACATGCACTCGCCGAAACTTCACTGAAATTATGGCTG
EST: GAGACAGCTAAAGGCGGCCAAGAAAATTCTAATCTATCTATAGTCAATCG ACTATCAGAAGAGGACATGCACTCGCCGAAACTTCACTGAAATTATGGCTGEST: gi|37825665|gb|BJ583731.1|BJ583731
genomic: GAGACAGCTAAAGGCGGCCAAGAAAATTCTAATCTATCTATAGTCAATCGgtaatgctgc ... ttctttgcagACTATCAGAAGAGGACATGCACTCGCCGAAACTTCACTGAAATTATGGCTG
EST: GAGACAGCTAAAGGCGGCCAAGAAAATTCTAATCTATCTATAGTCAATCG ACTATCAGAAGAGGACATGCACTCGCCGAAACTTCACTGAAATTATGGCTGEST: gi|37840117|gb|BJ598125.1|BJ598125
genomic: GAGACAGCTAAAGGCGGCCAAGAAAATTCTAATCTATCTATAGTCAATCGgtaatgctgc ... ttctttgcagACTATCAGAAGAGGACATGCACTCGCCGAAACTTCACTGAAATTATGGCTG
EST: GAGACAGCTAAAGGCGGCCAAGAAAATTCTAATCTATCTATAGTCAATCG ACTATCAGAAGAGGACATGCACTCGCCGAAACTTCACTGAAATTATGGCTG
genomic: GAGACAGCTAAAGGCGGCCAAGAAAATTCTAATCTATCTATAGTCAATCGgtaatgctgc ... ttctttgcagACTATCAGAAGAGGACATGCACTCGCCGAAACTTCACTGAAATTATGGCTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGGAATTAAAGCCCGATCGTTGAAATCTATTAAATGATCCAACGAAGGACGAGACAGCTAAAGGCGGCCAAGAAAATTCTAATCTATCTATAGTCAATCGgtaatgctgcctagtcttcgtggttttaaacgctttgttgggcacagtgcaatgcttcaatcctatacttgtgtgcggtgtgtttatgcctgtgtttgtg
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