1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
ACAGCTGATAGTGTTTGTTTTTTCGGCGTTGCGCATCCCTgtgagctcgtgtgcacttctttgtttcgttaaaagttgtgtgtgcaagttgggtttgtggtgggttctctacttaattcgaccctctgcgggatttctgt...
species | Physcomitrella patens |
transcript | PP1S62_157V6.2 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: ACAGCTGATAGTGTTTGTTTTTTCGGCGTTGCGCATCCCT AATAATATTGCTCCGAAAGTCATGGCTCTGAAGACAGCAGCCATGACAGGAEST: gi|162156416|gb|FC332648.1|FC332648
genomic: ACAGCTGATAGTGTTTGTTTTTTCGGCGTTGCGCATCCCTgtgagctcgt ... gtatttgcagAATAATATTGCTCCGAAAGTCATGGCTCTGAAGACAGCAGCCATGACAGGA
EST: GCTGATAGTGTTTGTTTTTTCGGCGTTGCGCATCCCT AATAATATTGCTCCGAAAGTCATGGCTCTGAAGACAGCAGCCATGACAGGAEST: gi|162168654|gb|FC343916.1|FC343916
genomic: GCTGATAGTGTTTGTTTTTTCGGCGTTGCGCATCCCTgtgagctcgt ... gtatttgcagAATAATATTGCTCCGAAAGTCATGGCTCTGAAGACAGCAGCCATGACAGGA
EST: GCTGATAGTGTTTGTTTTTTCGGCGTTGCGCATCCCT AATAATATTGCTCCGAAAGTCATGGCTCTGAAGACAGCAGCCATGACAGGAEST: gi|18329065|gb|BJ161071.1|BJ161071
genomic: GCTGATAGTGTTTGTTTTTTCGGCGTTGCGCATCCCTgtgagctcgt ... gtatttgcagAATAATATTGCTCCGAAAGTCATGGCTCTGAAGACAGCAGCCATGACAGGA
EST: ACAGCTGATAGTGTTTGTTTTTTCGGCGTTGCGCATCCCT AATAATATTGCTCCGAAAGTCATGGCTCTGAAGACAGCAGCCATGACAGGAEST: gi|18358713|gb|BJ190772.1|BJ190772
genomic: ACAGCTGATAGTGTTTGTTTTTTCGGCGTTGCGCATCCCTgtgagctcgt ... gtatttgcagAATAATATTGCTCCGAAAGTCATGGCTCTGAAGACAGCAGCCATGACAGGA
EST: ACAGCTGATAGTGTTTGTTTTTTCGGCGTTGCGCATCCCT AATAATATTGCTCCGAAAGTCATGGCTCTGAAGACAGCAGCCATGACAGGAEST: gi|100375682|gb|BY968157.1|BY968157
genomic: ACAGCTGATAGTGTTTGTTTTTTCGGCGTTGCGCATCCCTgtgagctcgt ... gtatttgcagAATAATATTGCTCCGAAAGTCATGGCTCTGAAGACAGCAGCCATGACAGGA
EST: ACAGCTGATAGTGTTTGTTTTTTCGGCGTTGCGCATCCCT AATAATATTGCTCCGAAAGTCATGGCTCTGAAGACAGCAGCCATGACAGGAEST: gi|18358530|gb|BJ190589.1|BJ190589
genomic: ACAGCTGATAGTGTTTGTTTTTTCGGCGTTGCGCATCCCTgtgagctcgt ... gtatttgcagAATAATATTGCTCCGAAAGTCATGGCTCTGAAGACAGCAGCCATGACAGGA
EST: ACAGCTGATAGTGTTTGTTTTTTCGGCGTTGCGCATCCCT AATAATATTGCTCCGAAAGTCATGGCTCTGAAGACAGCAGCCATGACAGGAEST: gi|18343769|gb|BJ175807.1|BJ175807
genomic: ACAGCTGATAGTGTTTGTTTTTTCGGCGTTGCGCATCCCTgtgagctcgt ... gtatttgcagAATAATATTGCTCCGAAAGTCATGGCTCTGAAGACAGCAGCCATGACAGGA
EST: ACAGCTGATAGTGTTTGTTTTTTCGGCGTTGCGCATCCCT AATAATATTGCTCCGAAAGTCATGGCTCTGAAGACAGCAGCCATGACAGGAEST: gi|18371305|gb|BJ202907.1|BJ202907
genomic: ACAGCTGATAGTGTTTGTTTTTTCGGCGTTGCGCATCCCTgtgagctcgt ... gtatttgcagAATAATATTGCTCCGAAAGTCATGGCTCTGAAGACAGCAGCCATGACAGGA
EST: ACAGCTGATAGTGTTTGTTTTTTCGGCGTTGCGCATCCCT AATAATATTGCTCCGAAAGTCATGGCTCTGAAGACAGCAGCCATGACAGGAEST: gi|18326677|gb|BJ158676.1|BJ158676
genomic: ACAGCTGATAGTGTTTGTTTTTTCGGCGTTGCGCATCCCTgtgagctcgt ... gtatttgcagAATAATATTGCTCCGAAAGTCATGGCTCTGAAGACAGCAGCCATGACAGGA
EST: ACAGCTGATAGTGTTTGTTTTTTCGGCGTTGCGCATCCCT AATAATATTGCTCCGAAAGTCATGGCTCTGAAGACAGCAGCCATGACAGGAEST: gi|18346948|gb|BJ178993.1|BJ178993
genomic: ACAGCTGATAGTGTTTGTTTTTTCGGCGTTGCGCATCCCTgtgagctcgt ... gtatttgcagAATAATATTGCTCCGAAAGTCATGGCTCTGAAGACAGCAGCCATGACAGGA
EST: GTTTTTTCGGCGTTGCGCATCCCT AATAATATTGCTCCGAAAGTCATGGCTCTGAAGACAGCAGCCATGACAGGAEST: gi|208352746|gb|DC905880.1|DC905880
genomic: GTTTTTTCGGCGTTGCGCATCCCTgtgagctcgt ... gtatttgcagAATAATATTGCTCCGAAAGTCATGGCTCTGAAGACAGCAGCCATGACAGGA
EST: ACAGCTGATAGTGTTTGTTTTTTCGGCGTTGCGCATCCCT AATAATATTGCTCCGAAAGTCATGGCTCTGAAGACAGCAGCCATGACAGGAEST: gi|100379666|gb|BY949883.1|BY949883
genomic: ACAGCTGATAGTGTTTGTTTTTTCGGCGTTGCGCATCCCTgtgagctcgt ... gtatttgcagAATAATATTGCTCCGAAAGTCATGGCTCTGAAGACAGCAGCCATGACAGGA
EST: ACAGCTGATAGTGTTTGTTTTTTCGGCGTTGCGCATCCCT AATAATATTGCTCCGAAAGTCATGGCTCTGAAGACAGCAGCCATGACAGGAEST: gi|18347535|gb|BJ179582.1|BJ179582
genomic: ACAGCTGATAGTGTTTGTTTTTTCGGCGTTGCGCATCCCTgtgagctcgt ... gtatttgcagAATAATATTGCTCCGAAAGTCATGGCTCTGAAGACAGCAGCCATGACAGGA
EST: ACAGCTGATAGTGTTTGTTTTTTCGGCGTTGCGCATCCCT AATAATATTGCTCCGAAAGTCATGGCTCTGAAGACAGCAGCCATGACAGGA
genomic: ACAGCTGATAGTGTTTGTTTTTTCGGCGTTGCGCATCCCTgtgagctcgt ... gtatttgcagAATAATATTGCTCCGAAAGTCATGGCTCTGAAGACAGCAGCCATGACAGGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACAGCTGATAGTGTTTGTTTTTTCGGCGTTGCGCATCCCTgtgagctcgtgtgcacttctttgtttcgttaaaagttgtgtgtgcaagttgggtttgtggtgggttctctacttaattcgaccctctgcgggatttctgt
CAGCTG
- AGCTGA
- GCTGAT