1 5' 3' | 2 5' 3' | 3 5' 3' |
...aattccttatcggctgtcattttttgatggctttgagggacctgcctgcctaaaataaccggcagatttttttttgataaacgttgctatttgtatgaagGGTGTGTGCATTTTAGCACTTGATGAGGTGGACTGTTTGCTGGAAAGCGGCTTTCGAGATCAAGTATTGCAGTTAGTCCAAGCCCTGGCGATGCCGCAGA
species | Physcomitrella patens |
transcript | PP1S62_132V6.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CAGGACGACTCATTGATCTCCTTTCAAAGCATGATGATCTGACTTTGCAG GGTGTGTGCATTTTAGCACTTGATGAGGTGGACTGTTTGCTGGAAAGCGGCEST: gi|162187057|gb|FC362839.1|FC362839
genomic: CAGGACGACTCATTGATCTCCTTTCAAAGCATGATGATCTGACTTTGCAGgtacagggtt ... ttgtatgaagGGTGTGTGCATTTTAGCACTTGATGAGGTGGACTGTTTGCTGGAAAGCGGC
EST: CAGGACGACTCATTGATCTCCTTTCAAAGCATGATGATCTGACTTTGCAG GGTGTGTGCATTTTAGCACTTGATGAGGTGGACTGTTTGCTGGAAAGCGGC
genomic: CAGGACGACTCATTGATCTCCTTTCAAAGCATGATGATCTGACTTTGCAGgtacagggtt ... ttgtatgaagGGTGTGTGCATTTTAGCACTTGATGAGGTGGACTGTTTGCTGGAAAGCGGC
ctgcctaaaataaccggcagatttttttttgataaacgttgctatttgtatgaagGGTGTGTGCATTTTAGCACTTGATGAGGTGGACTGTTTGCTGGAAAGCGGCTTTCGAGATCAAGTATTGCAGTTAGTCCAAGCCCTGGCGATGCCGCAGA
agatttttttttgata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aattccttatcggctgtcattttttgatggctttgagggacctgcctgcctaaaataaccggcagatttttttttgataaacgttgctatttgtatgaagGGTGTGTGCATTTTAGCACTTGATGAGGTGGACTGTTTGCTGGAAAGCGGCTTTCGAGATCAAGTATTGCAGTTAGTCCAAGCCCTGGCGATGCCGCAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA