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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgtttaactagtccggcacccttgttctgctttgctatggtcagctttgttgtacttgtagcatttcaatacttcacacttgggaaatctgcctctcctctgcacatatttaaagtactttcattacacgtcccatttggtccctaggctcacaagtaattctcacgtatgttcgaaattgttgtgatgacagGAGTTTCTGGGATCTGGGGTAGACTTTCCAGTTGGACATGTTTCTTTTTTTCTATTCTTCTCGGGGCATGTGGGAGCCTCCATTATTGCTACCTTGGATT

Basic information

species Physcomitrella patens
transcript PP1S62_12V6.1
intron # 2
splice site 3'
intron type U2


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggtccctaggctcacaagtaattctcacgtatgttcgaaattgttgtgatgacagGAGTTTCTGGGATCTGGGGTAGACTTTCCAGTTGGACATGTTTCTTTTTTTCTATTCTTCTCGGGGCATGTGGGAGCCTCCATTATTGCTACCTTGGATT
                     ttctcac  putative branch site (score: 2)
               aagtaatt  TA-rich tract