1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtatttcgaaatggattcaatctatgcatacatttatcattttagtaaattggtgcaactgatccttatttgtatattctccacgtttaacggtttatttgtgagattcagATACCAGGAAATACAGGAAGTATTGCAAGAACTTGTGCAGCCACTTGTGTTGGGTTACATCTTGTTGAG
species | Physcomitrella patens |
transcript | PP1S62_123V6.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AGCGGGATCAGCAGCAAAGATTACTGCAAGTGGTGTTGGTTTCACCCCAG ATACCAGGAAATACAGGAAGTATTGCAAGAACTTGTGCAGCCACTTGTGTTEST: gi|162207885|gb|FC383591.1|FC383591
genomic: AGCGGGATCAGCAGCAAAGATTACTGCAAGTGGTGTTGGTTTCACCCCAGgtatttcgaa ... tgagattcagATACCAGGAAATACAGGAAGTATTGCAAGAACTTGTGCAGCCACTTGTGTT
EST: AGCGGGATCAGCAGCAAAGATTACTGCAAGTGGTGTTGGTTTCACCCCAG ATACCAGGAAATACAGGAAGTATTGCAAGAACTTGTGCAGCCACTTGTGTT
genomic: AGCGGGATCAGCAGCAAAGATTACTGCAAGTGGTGTTGGTTTCACCCCAGgtatttcgaa ... tgagattcagATACCAGGAAATACAGGAAGTATTGCAAGAACTTGTGCAGCCACTTGTGTT
aactgatccttatttgtatattctccacgtttaacggtttatttgtgagattcagATACCAGGAAATACAGGAAGTATTGCAAGAACTTGTGCAGCCACTTGTGTTGGGTTACATCTTGTTGAG
gtttaac putative branch site (score: 6)
ttatttgtatattct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatttcgaaatggattcaatctatgcatacatttatcattttagtaaattggtgcaactgatccttatttgtatattctccacgtttaacggtttatttgtgagattcagATACCAGGAAATACAGGAAGTATTGCAAGAACTTGTGCAGCCACTTGTGTTGGGTTACATCTTGTTGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC