1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtatgaattctccggaagaatagagctgtttgaaatctatttcgggtgatcgcagcaaatggaatgtatagaaaatgtcaggcagaatgaagaagcttactttctgatgagactaactgtaaaaacttcatgtagAAACCGAAGTCCTAGCTTGCCTGCAACTTTCAGCGGCTGAGTGGAAGGACAGGTTTCCCTCTACGGAAAAACCAGGACGGGAGGATGATTTGTTGGTGTT
species | Physcomitrella patens |
transcript | PP1S61_55V6.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CGCAGCCCGCGTGACGCCCAAGCTCTTTGAAAATGTAATCAACATTCCTG AAACCGAAGTCCTAGCTTGCCTGCAACTTTCAGCGGCTGAGTGGAAGGACAEST: gi|100424005|gb|BY976620.1|BY976620
genomic: CGCAGCCCGCGTGACGCCCAAGCTCTTTGAAAATGTAATCAACATTCCTGgtatgaattc ... cttcatgtagAAACCGAAGTCCTAGCTTGCCTGCAACTTTCAGCGGCTGAGTGGAAGGACA
EST: CGCAGCCCGCGTGACGCCCAAGCTCTTTGAAAATGTAATCAACATTCCTG AAACCGAAGTCCTAGCTTGCCTGCAACTTTCAGCGGCTGAGTGGAAGGACAEST: gi|100388968|gb|BY988844.1|BY988844
genomic: CGCAGCCCGCGTGACGCCCAAGCTCTTTGAAAATGTAATCAACATTCCTGgtatgaattc ... cttcatgtagAAACCGAAGTCCTAGCTTGCCTGCAACTTTCAGCGGCTGAGTGGAAGGACA
EST: CGCAGCCCGCGTGACGCCCAAGCTCTTTGAAAATGTAATCAACATTCCTG AAACCGAAGTCCTAGCTTGCCTGCAACTTTCAGCGGCTGAGTGGAAGGACAEST: gi|100414410|gb|BY992761.1|BY992761
genomic: CGCAGCCCGCGTGACGCCCAAGCTCTTTGAAAATGTAATCAACATTCCTGgtatgaattc ... cttcatgtagAAACCGAAGTCCTAGCTTGCCTGCAACTTTCAGCGGCTGAGTGGAAGGACA
EST: CGCAGCCCGCGTGACGCCCAAGCTCTTTGAAAATGTAATCAACATTCCTG AAACCGAAGTCCTAGCTTGCCTGCAACTTTCAGCGGCTGAGTGGAAGGACA
genomic: CGCAGCCCGCGTGACGCCCAAGCTCTTTGAAAATGTAATCAACATTCCTGgtatgaattc ... cttcatgtagAAACCGAAGTCCTAGCTTGCCTGCAACTTTCAGCGGCTGAGTGGAAGGACA
ggcagaatgaagaagcttactttctgatgagactaactgtaaaaacttcatgtagAAACCGAAGTCCTAGCTTGCCTGCAACTTTCAGCGGCTGAGTGGAAGGACAGGTTTCCCTCTACGGAAAAACCAGGACGGGAGGATGATTTGTTGGTGTT
gactaac putative branch site (score: 3)
taaaaactt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgaattctccggaagaatagagctgtttgaaatctatttcgggtgatcgcagcaaatggaatgtatagaaaatgtcaggcagaatgaagaagcttactttctgatgagactaactgtaaaaacttcatgtagAAACCGAAGTCCTAGCTTGCCTGCAACTTTCAGCGGCTGAGTGGAAGGACAGGTTTCCCTCTACGGAAAAACCAGGACGGGAGGATGATTTGTTGGTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG