1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
TCATGGAATTCGCACAGGTGTTTTGGAAGCCAGCAAGCTACTCTTAAAAAACATGGGACCAGAACTTTCTGATCTTCAGgtgtgtatcatgtagttcaagcaaggcgttttgtgcatttccttaacatcacttagcataactacatatgcacaaaatctttgaaatgtttcggtgtactaaaacatacgtcaacag
species | Physcomitrella patens |
transcript | PP1S61_37V6.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: CCAGCAAGCTACTCTTAAAAAACATGGGACCAGAACTTTCTGATCTTCAG GTGCAATCTTTGTCTTCCTTCACCAGCACTGTAATTGGGACTGCTGTCCGAEST: gi|162192425|gb|FC371668.1|FC371668
genomic: CCAGCAAGCTACTCTTAAAAAACATGGGACCAGAACTTTCTGATCTTCAGgtgtgtatca ... acgtcaacagGTGCAATCTTTGTCTTCCTTCACCAGCACTGTAATTGGGACTGCTGTCCGA
EST: AAAAACATGGGACCAGAACTTTCTGATCTTCAG GTGCAATCTTTGTCTTCCTTCACCAGCACTGTAATTGGGACTGCTGTCCGA
genomic: AAAAACATGGGACCAGAACTTTCTGATCTTCAGgtgtgtatca ... acgtcaacagGTGCAATCTTTGTCTTCCTTCACCAGCACTGTAATTGGGACTGCTGTCCGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCATGGAATTCGCACAGGTGTTTTGGAAGCCAGCAAGCTACTCTTAAAAAACATGGGACCAGAACTTTCTGATCTTCAGgtgtgtatcatgtagttcaagcaaggcgttttgtgcatttccttaacatcacttagcataactacatatgcacaaaatctttgaaatgtttcggtgtactaaaacatacgtcaacag
- - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - CAAGCT