1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...ttgttgtggtttaagcaacctggttatttactgattcacggtcaccgttaaggaagtatggtttcattttcttttctcacacaaggctatattacttcagGCAAGCCCATCCGATCAGGAGAACTTCCCCTTTGTAGTACTTGGAAATAAAGTGGACGTGGATGGTGGCAATAGTCGAGTG
species | Physcomitrella patens |
transcript | PP1S61_279V6.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TGAAGTCTTTTGATAACCTTGACAACTGGAGGGACGAGTTTCTGATTCAG GCAAGCCCATCCGATCAGGAGAACTTCCCCTTTGTAGTACTTGGAAATAAAEST: gi|208387145|gb|DC941317.1|DC941317
genomic: TGAAGTCTTTTGATAACCTTGACAACTGGAGGGACGAGTTTCTGATTCAGgcaagtatta ... attacttcagGCAAGCCCATCCGATCAGGAGAACTTCCCCTTTGTAGTACTTGGAAATAAA
EST: TGAAGTCTTTTGATAACCTTGACAACTGGAGGGACGAGTTTCTGATTCTG GCAAGCCCATCCGATCAGGAGAACTTCCCCTTTGTAGTACTTGGAGATAAAEST: gi|208372735|gb|DC952622.1|DC952622
genomic: TGAAGTCTTTTGATAACCTTGACAACTGGAGGGACGAGTTTCTGATTCAGgcaagtatta ... attacttcagGCAAGCCCATCCGATCAGGAGAACTTCCCCTTTGTAGTACTTGGAAATAAA
EST: TGAAGTCTTTTGATAACCTTGACAACTGGAGGGACGAGTTTCTGATTCAG GCAAGCCCATCCGATCAGGAGAACTTCCCCTTTGTAGTACTTGGAAATAAAEST: gi|162262701|gb|FC438483.1|FC438483
genomic: TGAAGTCTTTTGATAACCTTGACAACTGGAGGGACGAGTTTCTGATTCAGgcaagtatta ... attacttcagGCAAGCCCATCCGATCAGGAGAACTTCCCCTTTGTAGTACTTGGAAATAAA
EST: TGAAGTCTTTTGATAACCTTGACAACTGGAGGGACGAGTTTCTGATTCAG GCAAGCCCATCCGATCAGGAGAACTTCCCCTTTGTAGTACTTGGAAATAAA
genomic: TGAAGTCTTTTGATAACCTTGACAACTGGAGGGACGAGTTTCTGATTCAGgcaagtatta ... attacttcagGCAAGCCCATCCGATCAGGAGAACTTCCCCTTTGTAGTACTTGGAAATAAA
cgttaaggaagtatggtttcattttcttttctcacacaaggctatattacttcagGCAAGCCCATCCGATCAGGAGAACTTCCCCTTTGTAGTACTTGGAAATAAAGTGGACGTGGATGGTGGCAATAGTCGAGTG
ttctcac putative branch site (score: 71)
ttacttc putative PPT
tttcattttctttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgttgtggtttaagcaacctggttatttactgattcacggtcaccgttaaggaagtatggtttcattttcttttctcacacaaggctatattacttcagGCAAGCCCATCCGATCAGGAGAACTTCCCCTTTGTAGTACTTGGAAATAAAGTGGACGTGGATGGTGGCAATAGTCGAGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG