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 5'  3'   		2  
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatgagttctggatgttgactcatgtgattgtttgcttcattctcttgaattgatggttgttgtgtggaaatcttgagtattctattgtgccgatcgtgcagGTTGGGTGAGAAGCCTTCGACGTTATCGAAAATGGACGTGGCAGCTTCGGTAGCTGGTCAGACCCAGTTCACGGTTGACTTGTACAAAACCTTGGTTAAG

Basic information

species Physcomitrella patens
transcript PP1S61_265V6.4
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18369508|gb|BJ201595.1|BJ201595
EST:     TACCCCAATGAGGGATTCAGTGTTCGTAAGAAGATTTTGAGCTGGTTTAG                         GTTGGGTGAGAAGCCTTCGACGTTATCGAAAATGGACGTGGCAGCTTCGGT
genomic: TACCCCAATGAGGGATTCAGTGTTCGTAAGAAGATTTTGAGCTGGTTTAGgtaatgagtt ... gatcgtgcagGTTGGGTGAGAAGCCTTCGACGTTATCGAAAATGGACGTGGCAGCTTCGGT
EST: gi|18370456|gb|BJ202058.1|BJ202058
EST:     TACCCCAATGAGGGATTCAGTGTTCGTAAGAAGATTTTGAGCTGGTTTAG                         GTTGGGTGAGAAGCCTTCGACGTTATCGAAAATGGACGTGGCAGCTTCGGT
genomic: TACCCCAATGAGGGATTCAGTGTTCGTAAGAAGATTTTGAGCTGGTTTAGgtaatgagtt ... gatcgtgcagGTTGGGTGAGAAGCCTTCGACGTTATCGAAAATGGACGTGGCAGCTTCGGT
EST: gi|18347845|gb|BJ179892.1|BJ179892
EST:     TACCCCAATGAGGGATTCAGTGTTCGTAAGAAGATTTTGAGCTGGTTTAG                         GTAGGGTGAGAAGCCTTCGACGTTATCGAAAATGGACGTGGCAGCTTCGGT
genomic: TACCCCAATGAGGGATTCAGTGTTCGTAAGAAGATTTTGAGCTGGTTTAGgtaatgagtt ... gatcgtgcagGTTGGGTGAGAAGCCTTCGACGTTATCGAAAATGGACGTGGCAGCTTCGGT
EST: gi|18364225|gb|BJ196298.1|BJ196298
EST:     TACCCCAATGAGGGATTCAGTGTTCGTAAGAAGATTTTGAGCTGGTTTAG                         GTTGGGTGAGAAGCCTTCGACGTTATCGAAAATGGACGTGGCAGCTTCGGT
genomic: TACCCCAATGAGGGATTCAGTGTTCGTAAGAAGATTTTGAGCTGGTTTAGgtaatgagtt ... gatcgtgcagGTTGGGTGAGAAGCCTTCGACGTTATCGAAAATGGACGTGGCAGCTTCGGT
EST: gi|18372754|gb|BJ204356.1|BJ204356
EST:     TACCCCAATGAGGGATTCAGTGTTCGTAAGAAGATTTTGAGCTGGTTTAG                         GTTGGGTGAGAAGCCTTCGACGTTATCGAAAATGGACGTGGCAGCTTCGGT
genomic: TACCCCAATGAGGGATTCAGTGTTCGTAAGAAGATTTTGAGCTGGTTTAGgtaatgagtt ... gatcgtgcagGTTGGGTGAGAAGCCTTCGACGTTATCGAAAATGGACGTGGCAGCTTCGGT
EST: gi|18358415|gb|BJ190474.1|BJ190474
EST:     TACCCCAATGAGGGATTCAGTGTTCGTAAGAAGATTTTGAGCTGGTTTAG                         GTTGGGTGAGAAGCCTTCGACGTTATCGAAAATGGACGTGGCAGCTTCGGT
genomic: TACCCCAATGAGGGATTCAGTGTTCGTAAGAAGATTTTGAGCTGGTTTAGgtaatgagtt ... gatcgtgcagGTTGGGTGAGAAGCCTTCGACGTTATCGAAAATGGACGTGGCAGCTTCGGT
EST: gi|18329582|gb|BJ161588.1|BJ161588
EST:     TACCCCAATGAGGGATTCAGTGTTCGTAAGAAGATTTTGAGCTGGTTTAG                         GTTGGGTGAGAAGCCTTCGACGTTATCGAAAATGGACGTGGCAGCTTCGGT
genomic: TACCCCAATGAGGGATTCAGTGTTCGTAAGAAGATTTTGAGCTGGTTTAGgtaatgagtt ... gatcgtgcagGTTGGGTGAGAAGCCTTCGACGTTATCGAAAATGGACGTGGCAGCTTCGGT
EST: gi|18356744|gb|BJ188803.1|BJ188803
EST:     TACCCCAATGAGGGATTCAGTGTTCGTAAGAAGATTTTGAGCTGGTTTAG                         GTTGGGTGAGAAGCCTTCGACGTTATCGAAAATGGACGTGGCAGCTTCGGT
genomic: TACCCCAATGAGGGATTCAGTGTTCGTAAGAAGATTTTGAGCTGGTTTAGgtaatgagtt ... gatcgtgcagGTTGGGTGAGAAGCCTTCGACGTTATCGAAAATGGACGTGGCAGCTTCGGT
EST: gi|100365638|gb|BY966696.1|BY966696
EST:     TACCCCAATGAGGGATTCAGTGTTCGTAAGAAGATTTTGAGCTGGTTTAG                         GTTGGGTGAGAAGCCTTCGACGTTATCGAAAATGGACGTGGCAGCTTCGGT
genomic: TACCCCAATGAGGGATTCAGTGTTCGTAAGAAGATTTTGAGCTGGTTTAGgtaatgagtt ... gatcgtgcagGTTGGGTGAGAAGCCTTCGACGTTATCGAAAATGGACGTGGCAGCTTCGGT
EST: gi|18371802|gb|BJ203404.1|BJ203404
EST:     TACCCCAATGAGGGATTCAGTGTTCGTAAGAAGATTTTGAGCTGGTTTAA                         GTTGGGTGAGAAGCCTTCGACGTTATCGAAAATGGACGTGGCAGCTTCGGT
genomic: TACCCCAATGAGGGATTCAGTGTTCGTAAGAAGATTTTGAGCTGGTTTAGgtaatgagtt ... gatcgtgcagGTTGGGTGAGAAGCCTTCGACGTTATCGAAAATGGACGTGGCAGCTTCGGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gaattgatggttgttgtgtggaaatcttgagtattctattgtgccgatcgtgcagGTTGGGTGAGAAGCCTTCGACGTTATCGAAAATGGACGTGGCAGCTTCGGTAGCTGGTCAGACCCAGTTCACGGTTGACTTGTACAAAACCTTGGTTAAG
 aattgat  putative branch site (score: 4)
                               tattctatt  TA-rich tract