Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGTGCGCTTGGTGGACATGGCAGCCAATGCATTCCTTGCGAACAGGTTGACGGCCGCGCCTTCACTGGCCTCGGCTTCCTGCTCACACACTTCTTCAGCTgtaagtgtttcggttcatgttttgtcgtggatttccagctccgttactcatccaatcgagtgtgattgttgggattccttcagtggttcacgtcaatgcg...

Basic information

species Physcomitrella patens
transcript PP1S61_236V6.2
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100391090|gb|BY953100.1|BY953100
EST:     CGGCCGCGCCTTCACTGGCCTCGGCTTCCTGCTCACACACTTCTTCAGCT                         CTAGAGGCAAGTCCTGCAGTATGCGGTGTCGTCACAAGACCTGCAGCTCCG
genomic: CGGCCGCGCCTTCACTGGCCTCGGCTTCCTGCTCACACACTTCTTCAGCTgtaagtgttt ... tattgcgcagCTAGAGGCAAGTCCTGCAGTATGCGGTGTCGTCACAAGACCTGCAGCTCCG
EST: gi|162170725|gb|FC346312.1|FC346312
EST:     CGGCCGCGCCTTCACTGGCCTCGGCTTCCTGCTCACACACTTCTTCAGCT                         CTAGAGGCAAGTCCTGCAGTATGCGGTGTCGTCACAAGACCTGCAGCTCCG
genomic: CGGCCGCGCCTTCACTGGCCTCGGCTTCCTGCTCACACACTTCTTCAGCTgtaagtgttt ... tattgcgcagCTAGAGGCAAGTCCTGCAGTATGCGGTGTCGTCACAAGACCTGCAGCTCCG
EST: gi|208379062|gb|DC911587.1|DC911587
EST:     CGGCCGCGCCTTCACTGGCCTCGGCTTCCTGCTCACACACTTCTTCAGCT                         CTAGAGGCAAGTCCTGCAGTATGCGGTGTCGTCACAAGACCTGCAGCTCCG
genomic: CGGCCGCGCCTTCACTGGCCTCGGCTTCCTGCTCACACACTTCTTCAGCTgtaagtgttt ... tattgcgcagCTAGAGGCAAGTCCTGCAGTATGCGGTGTCGTCACAAGACCTGCAGCTCCG
EST: gi|162159310|gb|FC335137.1|FC335137
EST:     CGGCCGCGCCTTCACTGGCCTCGGCTTCCTGCTCACACACTTCTTCAGCT                         CTAGAGGCAAGTCCTGCAGTATGCGGTGTCGTCACAAGACCTGCAGCTCCG
genomic: CGGCCGCGCCTTCACTGGCCTCGGCTTCCTGCTCACACACTTCTTCAGCTgtaagtgttt ... tattgcgcagCTAGAGGCAAGTCCTGCAGTATGCGGTGTCGTCACAAGACCTGCAGCTCCG
EST: gi|162252429|gb|FC427823.1|FC427823
EST:     CGGCCGCGCCTTCACTGGCCTCGGCTTCCTGCTCACACACTTCTTCAGCT                         CTAGAGGCAAGTCCTGCAGTATGCGGTGTCGTCACAAGACCTGCAGCTCCG
genomic: CGGCCGCGCCTTCACTGGCCTCGGCTTCCTGCTCACACACTTCTTCAGCTgtaagtgttt ... tattgcgcagCTAGAGGCAAGTCCTGCAGTATGCGGTGTCGTCACAAGACCTGCAGCTCCG
EST: gi|208346318|gb|DC905265.1|DC905265
EST:     CGGCCGCGCCTTCACTGGCCTCGGCTTCCTGCTCACACACTTCTTCAGCT                         CTAGAGGCAAGTCCTGCAGTATGCGGTGTCGTCACAAGACCTGCAGCTCCG
genomic: CGGCCGCGCCTTCACTGGCCTCGGCTTCCTGCTCACACACTTCTTCAGCTgtaagtgttt ... tattgcgcagCTAGAGGCAAGTCCTGCAGTATGCGGTGTCGTCACAAGACCTGCAGCTCCG
EST: gi|208359372|gb|DC939125.1|DC939125
EST:     CGGCCGCGCCTTCACTGGCCTCGGCTTCCTGCTCACACACTTCTTCAGCT                         CTAGAGGCAAGTCCTGCAGTATGCGGTGTCGTCACAAGACCTGCAGCTCCG
genomic: CGGCCGCGCCTTCACTGGCCTCGGCTTCCTGCTCACACACTTCTTCAGCTgtaagtgttt ... tattgcgcagCTAGAGGCAAGTCCTGCAGTATGCGGTGTCGTCACAAGACCTGCAGCTCCG
EST: gi|100360090|gb|BY966020.1|BY966020
EST:     CGGCCGCGCCTTCACTGGCCTCGGCTTCCTGCTCACACACTTCTTCAGCT                         CTAGAGGCAAGTCCTGCAGTATGCGGTGTCGTCACAAGACCTGCAGCTCCG
genomic: CGGCCGCGCCTTCACTGGCCTCGGCTTCCTGCTCACACACTTCTTCAGCTgtaagtgttt ... tattgcgcagCTAGAGGCAAGTCCTGCAGTATGCGGTGTCGTCACAAGACCTGCAGCTCCG
EST: gi|67573350|gb|BJ946174.1|BJ946174
EST:     CGGCCGCGCCTTCACTGGCCTCGGCTTCCTGCTCACACACTTCTTCAGCT                         CTAGAGGCAAGTCCTGCAGTATGCGGTGTCGTCACAAGACCTGCAGCTCCG
genomic: CGGCCGCGCCTTCACTGGCCTCGGCTTCCTGCTCACACACTTCTTCAGCTgtaagtgttt ... tattgcgcagCTAGAGGCAAGTCCTGCAGTATGCGGTGTCGTCACAAGACCTGCAGCTCCG
EST: gi|100388863|gb|BY988739.1|BY988739
EST:     CGGCCGCGCCTTCACTGGCCTCGGCTTCCTGCTCACACACTTCTTCAGCT                         CTAGAGGCAAGTCCTGCAGTATGCGGTGTCGTCACAAGACCTGCAGCTCCG
genomic: CGGCCGCGCCTTCACTGGCCTCGGCTTCCTGCTCACACACTTCTTCAGCTgtaagtgttt ... tattgcgcagCTAGAGGCAAGTCCTGCAGTATGCGGTGTCGTCACAAGACCTGCAGCTCCG
EST: gi|162188538|gb|FC363720.1|FC363720
EST:     CACTGGCCTCGGCTTCCTGCTCACACACTTCTTCAGCT                         CTAGAGGCAAGTCCTGCAGTATGCGGTGTCGTCACAAGACCTGCAGCTCCG
genomic: CACTGGCCTCGGCTTCCTGCTCACACACTTCTTCAGCTgtaagtgttt ... tattgcgcagCTAGAGGCAAGTCCTGCAGTATGCGGTGTCGTCACAAGACCTGCAGCTCCG
EST: gi|208383415|gb|DC907590.1|DC907590
EST:     CGGCCGCGCCTTCACTGGCCTCGGCTTCCTGCTCACACACTTCTTCAGCT                         CTAGAGGCAAGTCCTGCAGTATGCGGTGTCGTCACAAGACCTGCAGCTCCG
genomic: CGGCCGCGCCTTCACTGGCCTCGGCTTCCTGCTCACACACTTCTTCAGCTgtaagtgttt ... tattgcgcagCTAGAGGCAAGTCCTGCAGTATGCGGTGTCGTCACAAGACCTGCAGCTCCG
EST: gi|208398083|gb|DC904388.1|DC904388
EST:     CGGCCGCGCCTTCACTGGCCTCGGCTTCCTGCTCACACACTTCTTCAGCT                         CTAGAGGCAAGTCCTGCAGTATGCGGTGTCGTCACAAGACCTGCAGCTCCG
genomic: CGGCCGCGCCTTCACTGGCCTCGGCTTCCTGCTCACACACTTCTTCAGCTgtaagtgttt ... tattgcgcagCTAGAGGCAAGTCCTGCAGTATGCGGTGTCGTCACAAGACCTGCAGCTCCG
EST: gi|100435354|gb|BY979201.1|BY979201
EST:     CGGCCGCGCCTTCACTGGCCTCGGCTTCCTGCTCACACACTTCTTCAGCT                         CTAGAGGCAAGTCCTGCAGTATGCGGTGTCGTCACAAGACCTGCAGCTCCG
genomic: CGGCCGCGCCTTCACTGGCCTCGGCTTCCTGCTCACACACTTCTTCAGCTgtaagtgttt ... tattgcgcagCTAGAGGCAAGTCCTGCAGTATGCGGTGTCGTCACAAGACCTGCAGCTCCG
EST: gi|100387924|gb|BY970669.1|BY970669
EST:     CGGCCGCGCCTTCACTGGCCTCGGCTTCCTGCTCACACACTTCTTCAGCT                         CTAGAGGCAAGTCCTGCAGTATGCGGTGTCGTCACAAGACCTGCAGCTCCG
genomic: CGGCCGCGCCTTCACTGGCCTCGGCTTCCTGCTCACACACTTCTTCAGCTgtaagtgttt ... tattgcgcagCTAGAGGCAAGTCCTGCAGTATGCGGTGTCGTCACAAGACCTGCAGCTCCG
EST: gi|19789638|gb|BQ041425.1|BQ041425
EST:     CGGCCGCGCCTTCACTGGCCTCGGCTTCCTGCTCACACACTTCTTCAGCT                         CTAGAGGCAAGTCCTGCAGTATGCGGTGTCGTCACAAGACCTGCAGCTCCG
genomic: CGGCCGCGCCTTCACTGGCCTCGGCTTCCTGCTCACACACTTCTTCAGCTgtaagtgttt ... tattgcgcagCTAGAGGCAAGTCCTGCAGTATGCGGTGTCGTCACAAGACCTGCAGCTCCG
EST: gi|208346250|gb|DC909542.1|DC909542
EST:     CGGCCGCGCCTTCACTGGCCTCGGCTTCCTGCTCACACACTTCTTCAGCT                         CTAGAGGCAAGTCCTGCAGTATGCGGTGTCGTCACAAGACCTGCAGCTCCG
genomic: CGGCCGCGCCTTCACTGGCCTCGGCTTCCTGCTCACACACTTCTTCAGCTgtaagtgttt ... tattgcgcagCTAGAGGCAAGTCCTGCAGTATGCGGTGTCGTCACAAGACCTGCAGCTCCG
EST: gi|208388898|gb|DC932926.1|DC932926
EST:     CGGCCGCGCCTTCACTGGCCTCGGCTTCCTGCTCACACACTTCTTCAGCT                         CTAGAGGCAAGTCCTGCAGTATGCGGTGTCGTCACAAGACCTGCAGCTCCG
genomic: CGGCCGCGCCTTCACTGGCCTCGGCTTCCTGCTCACACACTTCTTCAGCTgtaagtgttt ... tattgcgcagCTAGAGGCAAGTCCTGCAGTATGCGGTGTCGTCACAAGACCTGCAGCTCCG
EST: gi|67719140|gb|BJ969399.1|BJ969399
EST:     CGGCCGCGCCTTCACTGGCCTCGGCTTCCTGCTCACACACTTCTTCAGCT                         CTAGAGGCAAGTCCTGCAGTATGCGGTGTCGTCACAAGACCTGCAGCTCCG
genomic: CGGCCGCGCCTTCACTGGCCTCGGCTTCCTGCTCACACACTTCTTCAGCTgtaagtgttt ... tattgcgcagCTAGAGGCAAGTCCTGCAGTATGCGGTGTCGTCACAAGACCTGCAGCTCCG
EST: gi|162202874|gb|FC379856.1|FC379856
EST:     CGGCCGCGCCTTCACTGGCCTCGGCTTCCTGCTCACACACTTCTTCAGCT                         CTAGAGGCAAGTCCTGCAGTATGCGGTGTCGTCACAAGACCTGCAGCTCCG
genomic: CGGCCGCGCCTTCACTGGCCTCGGCTTCCTGCTCACACACTTCTTCAGCTgtaagtgttt ... tattgcgcagCTAGAGGCAAGTCCTGCAGTATGCGGTGTCGTCACAAGACCTGCAGCTCCG
EST: gi|100441634|gb|BY962725.1|BY962725
EST:     CGGCCGCGCCTTCACTGGCCTCGGCTTCCTGCTCACACACTTCTTCAGCT                         CTAGAGGCAAGTCCTGCAGTATGCGGTGTCGTCACAAGACCTGCAGCTCCG
genomic: CGGCCGCGCCTTCACTGGCCTCGGCTTCCTGCTCACACACTTCTTCAGCTgtaagtgttt ... tattgcgcagCTAGAGGCAAGTCCTGCAGTATGCGGTGTCGTCACAAGACCTGCAGCTCCG
EST: gi|162244029|gb|FC422345.1|FC422345
EST:     CGGCCGCGCCTTCACTGGCCTCGGCTTCCTGCTCACACACTTCTTCAGCT                         CTAGAGGCAAGTCCTGCAGTATGCGGTGTCGTCACAAGACCTGCAGCTCCG
genomic: CGGCCGCGCCTTCACTGGCCTCGGCTTCCTGCTCACACACTTCTTCAGCTgtaagtgttt ... tattgcgcagCTAGAGGCAAGTCCTGCAGTATGCGGTGTCGTCACAAGACCTGCAGCTCCG
EST: gi|18330624|gb|BJ162630.1|BJ162630
EST:     CGGCCGCGCCTTCACTGGCCTCGGCTTCCTGCTCACACACTTCTTCAGCT                         CTAGAGGCAAGTCCTGCAGTATGCGGTGTCGTCACAAGACCTGCAGCTCCG
genomic: CGGCCGCGCCTTCACTGGCCTCGGCTTCCTGCTCACACACTTCTTCAGCTgtaagtgttt ... tattgcgcagCTAGAGGCAAGTCCTGCAGTATGCGGTGTCGTCACAAGACCTGCAGCTCCG
EST: gi|18351259|gb|BJ183311.1|BJ183311
EST:     CGGCCGCGCCTTCACTGGCCTCGGCTTCCTGCTCACACACTTCTTCAGCT                         CTAGAGGCAAGTCCTGCAGTATGCGGTGTCGTCACAAGACCTGCAGCTCCG
genomic: CGGCCGCGCCTTCACTGGCCTCGGCTTCCTGCTCACACACTTCTTCAGCTgtaagtgttt ... tattgcgcagCTAGAGGCAAGTCCTGCAGTATGCGGTGTCGTCACAAGACCTGCAGCTCCG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AGTGCGCTTGGTGGACATGGCAGCCAATGCATTCCTTGCGAACAGGTTGACGGCCGCGCCTTCACTGGCCTCGGCTTCCTGCTCACACACTTCTTCAGCTgtaagtgtttcggttcatgttttgtcgtggatttccagctccgttactcatccaatcgagtgtgattgttgggattccttcagtggttcacgtcaatgcg

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT