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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAGCTCCGTGATGGAACTATAAAACCCGCTTCGTCGGATTTGTCAATTGTTGAGTTGTAGAGACGTCTTGTTTCGTTACCCAGTTGCTCAATTTTGCTAGgtacacgctctttattctgtagcgaaggaattatgaaaagttgatttatgtgttggtgagttaggtttgggtggtaactgggttttttggaagttgggtttttgacctagggttttttaagctttgaattagcgtgtttttgtaaccttggagtaattgtgttggtgtgcag

Basic information

species Physcomitrella patens
transcript PP1S61_191V6.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100436255|gb|BY961125.1|BY961125
EST:     TGAGTTGTAGAGACGTCTTGTTTCGTTACCCAGTTGCTCAATTTTGCTAG                         GAGAGTATAAGAGTGCAGGATTGTGTGAGAGGTTTTTGTGTGAGGGGCTTG
genomic: TGAGTTGTAGAGACGTCTTGTTTCGTTACCCAGTTGCTCAATTTTGCTAGgtacacgctc ... tggtgtgcagGAGAGTATAAGAGTGCAGGATTGTGTGAGAGGTTTTTGTGTGAGGGGCTTG
EST: gi|208388173|gb|DC941756.1|DC941756
EST:     TGAGTTGTAGAGACGTCTTGTTTCGTTACCCAGTTGCTCAATTTTGCTAG                         GAGAGTATAAGAGTGCAGGATTGTGTGAGAGGTTTTTGTGTGAGGGGCTTG
genomic: TGAGTTGTAGAGACGTCTTGTTTCGTTACCCAGTTGCTCAATTTTGCTAGgtacacgctc ... tggtgtgcagGAGAGTATAAGAGTGCAGGATTGTGTGAGAGGTTTTTGTGTGAGGGGCTTG
EST: gi|100407338|gb|BY991652.1|BY991652
EST:     TGAGTTGTAGAGACGTCTTGTTTCGTTACCCAGTTGCTCAATTTTGCTAG                         GAGAGTATAAGAGTGCAGGATTGTGTGAGAGGTTTTTGCGTGAGGGGCTTG
genomic: TGAGTTGTAGAGACGTCTTGTTTCGTTACCCAGTTGCTCAATTTTGCTAGgtacacgctc ... tggtgtgcagGAGAGTATAAGAGTGCAGGATTGTGTGAGAGGTTTTTGTGTGAGGGGCTTG
EST: gi|208389876|gb|DC937707.1|DC937707
EST:     TGAGTTGTAGAGACGTCTTGTTTCGTTACCCAGTTGCTCAATTTTGCTAG                         GAGAGTATAAGAGTGCAGGATTGTGTGAGAGGTTTTTGTGTGAGGGGCTTG
genomic: TGAGTTGTAGAGACGTCTTGTTTCGTTACCCAGTTGCTCAATTTTGCTAGgtacacgctc ... tggtgtgcagGAGAGTATAAGAGTGCAGGATTGTGTGAGAGGTTTTTGTGTGAGGGGCTTG
EST: gi|100411911|gb|BY992401.1|BY992401
EST:     TGAGTTGTAGAGACGTCTTGTTTCGTTACCCAGTTGCTCAATTTTGCTAG                         GAGAGTATAAGAGTGCAGGATTGTGTGAGAGGTTTTTGTGTGAGGGGCTTG
genomic: TGAGTTGTAGAGACGTCTTGTTTCGTTACCCAGTTGCTCAATTTTGCTAGgtacacgctc ... tggtgtgcagGAGAGTATAAGAGTGCAGGATTGTGTGAGAGGTTTTTGTGTGAGGGGCTTG
EST: gi|100445148|gb|BY964447.1|BY964447
EST:     TGAGTTGTAGAGACGTCTTGTTTCGTTACCCAGTTGCTCAATTTTGCTAG                         GAGAGTATAAGAGTGCAGGATTGTGTGAGAGGTTTTTGTGTGAGGGGCTTG
genomic: TGAGTTGTAGAGACGTCTTGTTTCGTTACCCAGTTGCTCAATTTTGCTAGgtacacgctc ... tggtgtgcagGAGAGTATAAGAGTGCAGGATTGTGTGAGAGGTTTTTGTGTGAGGGGCTTG
EST: gi|208356420|gb|DC914296.1|DC914296
EST:     TGAGTTGTAGAGACGTCTTGTTTCGTTACCCAGTTGCTCAATTTTGCTAG                         GAGAGTATAAGAGTGCAGGATTGTGTGAGAGGTTTTTGTGTGAGGGGCTTG
genomic: TGAGTTGTAGAGACGTCTTGTTTCGTTACCCAGTTGCTCAATTTTGCTAGgtacacgctc ... tggtgtgcagGAGAGTATAAGAGTGCAGGATTGTGTGAGAGGTTTTTGTGTGAGGGGCTTG
EST: gi|100389931|gb|BY971283.1|BY971283
EST:     TGAGTTGTAGAGACGTCTTGTTTCGTTACCCAGTTGCTCAATTTTGCTAG                         GAGAGTATAAGAGTGCAGGATTGTGTGAGAGGTTTTTGTGTGAGGGGCTTG
genomic: TGAGTTGTAGAGACGTCTTGTTTCGTTACCCAGTTGCTCAATTTTGCTAGgtacacgctc ... tggtgtgcagGAGAGTATAAGAGTGCAGGATTGTGTGAGAGGTTTTTGTGTGAGGGGCTTG
EST: gi|18330296|gb|BJ162302.1|BJ162302
EST:     TGAGTTGTAGAGACGTCTTGTTTCGTTACCCAGTTGCTCAATTTTGCTAG                         GAGAGTATAAGAGTGCAGGATTGTGTGAGAGGTTTTTGTGTGAGGGGCTTG
genomic: TGAGTTGTAGAGACGTCTTGTTTCGTTACCCAGTTGCTCAATTTTGCTAGgtacacgctc ... tggtgtgcagGAGAGTATAAGAGTGCAGGATTGTGTGAGAGGTTTTTGTGTGAGGGGCTTG
EST: gi|100443639|gb|BY963736.1|BY963736
EST:     TGAGTTGTAGAGACGTCTTGTTTCGTTACCCAGTTGCTCAATTTTGCTAG                         GAGAGTATAAGAGTGCAGGATTGTGTGAGAGGTTTTTGTGTGAGGGGCTTG
genomic: TGAGTTGTAGAGACGTCTTGTTTCGTTACCCAGTTGCTCAATTTTGCTAGgtacacgctc ... tggtgtgcagGAGAGTATAAGAGTGCAGGATTGTGTGAGAGGTTTTTGTGTGAGGGGCTTG
EST: gi|208349798|gb|DC905922.1|DC905922
EST:     TGAGTTGTAGAGACGTCTTGTTTCGTTACCCAGTTGCTCAATTTTGCTAG                         GAGAGTATAAGAGTGCAGGATTGTGTGAGAGGTTTTTGTGTGAGGGGCTTG
genomic: TGAGTTGTAGAGACGTCTTGTTTCGTTACCCAGTTGCTCAATTTTGCTAGgtacacgctc ... tggtgtgcagGAGAGTATAAGAGTGCAGGATTGTGTGAGAGGTTTTTGTGTGAGGGGCTTG