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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGATACTTGGGAGCGGAGAAGTCAGCATGGGAGGAATATGACGCTACTTTGCTCGTAACGAAATACAACGGCCCTAAAACAACCATCCTTATTGACCAGgtccactttattacctacttttatcatgtctctcatgcctcgctttttatttgatccacctggtcatgatatcgcagggattggaacttctgtgaagattgatatgtctccgacatgtgtgcactacttacag

Basic information

species Physcomitrella patens
transcript PP1S61_17V6.4
intron # 7
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162270961|gb|FC447367.1|FC447367
EST:     TGCTCGTAACGAAATACAACGGCCCTAAAACAACCATCCTTATTGACCAG                         GGTGACGCAGATAAGTTCTACAAAGAGAATCAGCTCCTGCCAGAGAATTTC
genomic: TGCTCGTAACGAAATACAACGGCCCTAAAACAACCATCCTTATTGACCAGgtccacttta ... ctacttacagGGTGACGCAGATAAGTTCTACAAAGAGAATCAGCTCCTGCCAGAGAATTTC
EST: gi|7067447|gb|AW497302.1|AW497302
EST:     TGCTCGTAACGAAATACAACGGCCCTAAAACAACCATCCTTATTGACCAG                         GGTGACGCAGATAAGTTCTACAAAGAGAATCAGCTCCTGCCAGAGAATTTC
genomic: TGCTCGTAACGAAATACAACGGCCCTAAAACAACCATCCTTATTGACCAGgtccacttta ... ctacttacagGGTGACGCAGATAAGTTCTACAAAGAGAATCAGCTCCTGCCAGAGAATTTC
EST: gi|208364085|gb|DC943397.1|DC943397
EST:     TGCTCGTAACGAAATACAACGGCCCTAAAACAACCATCCTTATTGACCAG                         GGTGACGCANATAAGTTCTACAAAGAGAATCAGCTCCTGCCAGAGA
genomic: TGCTCGTAACGAAATACAACGGCCCTAAAACAACCATCCTTATTGACCAGgtccacttta ... ctacttacagGGTGACGCAGATAAGTTCTACAAAGAGAATCAGCTCCTGCCAGAGA
EST: gi|208380226|gb|DC919062.1|DC919062
EST:     TGCTCGTAACGAAATACAACGGCCCTAAAACAACCATCCTTATTGACCAG                         GGTGACGCAGATAAGTTCTACAAAGAGAATCAGCTCCTGCCAGAGAATTTC
genomic: TGCTCGTAACGAAATACAACGGCCCTAAAACAACCATCCTTATTGACCAGgtccacttta ... ctacttacagGGTGACGCAGATAAGTTCTACAAAGAGAATCAGCTCCTGCCAGAGAATTTC
EST: gi|208381483|gb|DC919485.1|DC919485
EST:     TGCTCGTAACGAAATACAACGGCCCTAAAACAACCATCCTTATTGACCAG                         GGTGACGCAGATAAGTTCTACAAAGAGAATCAGCTCCTGCCAGAGAATTTC
genomic: TGCTCGTAACGAAATACAACGGCCCTAAAACAACCATCCTTATTGACCAGgtccacttta ... ctacttacagGGTGACGCAGATAAGTTCTACAAAGAGAATCAGCTCCTGCCAGAGAATTTC
EST: gi|67727505|gb|BJ977764.1|BJ977764
EST:     TGCTCGTAACGAAATACAACGGCCCTAAAACAACCATCCTTATTGACCAG                         GGTGACGCAGATAAGTTCTACAAAGAGAATCAGCTCCTGCCAGAGAATTTC
genomic: TGCTCGTAACGAAATACAACGGCCCTAAAACAACCATCCTTATTGACCAGgtccacttta ... ctacttacagGGTGACGCAGATAAGTTCTACAAAGAGAATCAGCTCCTGCCAGAGAATTTC
EST: gi|208348165|gb|DC920956.1|DC920956
EST:     TGCTCGTAACGAAATACAACGGCCCTAAAACAACCATCCTTATTGACCAG                         GGTGACGCAGATAAGTTCTACAAAGAGAATCAGCTCCTGCCAGAGAATTTC
genomic: TGCTCGTAACGAAATACAACGGCCCTAAAACAACCATCCTTATTGACCAGgtccacttta ... ctacttacagGGTGACGCAGATAAGTTCTACAAAGAGAATCAGCTCCTGCCAGAGAATTTC
EST: gi|208396633|gb|DC924301.1|DC924301
EST:     TGCTCGTAACGAAATACAACGGCCCTAAAACAACCATCCTTATTGACCAG                         GGTGACGCAGATAAGTTCTACAAAGAGAATCAGCTCCTGCCAGAGAATTTC
genomic: TGCTCGTAACGAAATACAACGGCCCTAAAACAACCATCCTTATTGACCAGgtccacttta ... ctacttacagGGTGACGCAGATAAGTTCTACAAAGAGAATCAGCTCCTGCCAGAGAATTTC
EST: gi|37822595|gb|BJ580661.1|BJ580661
EST:     TGCTCGTAACGAAATACAACGGCCCTAAAACAACCATCCTTATTGACCAG                         GGTGACGCAGATAAGTTCTACAAAGAGAATCAGCTCCTGCCAGAGAATTTC
genomic: TGCTCGTAACGAAATACAACGGCCCTAAAACAACCATCCTTATTGACCAGgtccacttta ... ctacttacagGGTGACGCAGATAAGTTCTACAAAGAGAATCAGCTCCTGCCAGAGAATTTC
EST: gi|162192828|gb|FC370160.1|FC370160
EST:     TGCTCGTAACGAAATACAACGGCCCTAAAACAACCATCCTTATTGACCAG                         GGTGACGCAGATAAGTTCTACAAAGAGAATCAGCTCCTGCCAGAGAATTTC
genomic: TGCTCGTAACGAAATACAACGGCCCTAAAACAACCATCCTTATTGACCAGgtccacttta ... ctacttacagGGTGACGCAGATAAGTTCTACAAAGAGAATCAGCTCCTGCCAGAGAATTTC
EST: gi|162261130|gb|FC437485.1|FC437485
EST:     TGCTCGTAACGAAATACAACGGCCCTAAAACAACCATCCTTATTGACCAG                         GGTGACGCAGATAAGTTCTACAAAGAGAATCAGCTCCTGCCAGAGAATTTC
genomic: TGCTCGTAACGAAATACAACGGCCCTAAAACAACCATCCTTATTGACCAGgtccacttta ... ctacttacagGGTGACGCAGATAAGTTCTACAAAGAGAATCAGCTCCTGCCAGAGAATTTC
EST: gi|162267024|gb|FC443073.1|FC443073
EST:     TGCTCGTAACGAAATACAACGGCCCTAAAACAACCATCCTTATTGACCAG                         GGTGACGCAGATAAGTTCTACAAAGAGAATCAGCTCCTGCCAGAGAATTTC
genomic: TGCTCGTAACGAAATACAACGGCCCTAAAACAACCATCCTTATTGACCAGgtccacttta ... ctacttacagGGTGACGCAGATAAGTTCTACAAAGAGAATCAGCTCCTGCCAGAGAATTTC
EST: gi|67694518|gb|BJ954751.1|BJ954751
EST:     TGCTCGTAACGAAATACAACGGCCCTAAAACAACCATCCTTATTGACCAG                         GGTGACGCAGATAAGTTCTACAAAGAGAATCAGCTCCTGCCAGAGAATTTC
genomic: TGCTCGTAACGAAATACAACGGCCCTAAAACAACCATCCTTATTGACCAGgtccacttta ... ctacttacagGGTGACGCAGATAAGTTCTACAAAGAGAATCAGCTCCTGCCAGAGAATTTC
EST: gi|37846788|gb|BJ604796.1|BJ604796
EST:     TGCTCGTAACGAAATACAACGGCCCTAAAACAACCATCCTTATTGACCAG                         GGTGACGCAGATAAGTTCTACAAAGAGAATCAGCTCCTGCCAGAGAATTTC
genomic: TGCTCGTAACGAAATACAACGGCCCTAAAACAACCATCCTTATTGACCAGgtccacttta ... ctacttacagGGTGACGCAGATAAGTTCTACAAAGAGAATCAGCTCCTGCCAGAGAATTTC
EST: gi|37852990|gb|BJ610998.1|BJ610998
EST:     TGCTCGTAACGAAATACAACGGCCCTAAAACAACCATCCTTATTGACCAG                         GGTGACGCAGATAAGTTCTACAAAGAGAATCAGCTCCTGCCAGAGAATTTC
genomic: TGCTCGTAACGAAATACAACGGCCCTAAAACAACCATCCTTATTGACCAGgtccacttta ... ctacttacagGGTGACGCAGATAAGTTCTACAAAGAGAATCAGCTCCTGCCAGAGAATTTC
EST: gi|208371948|gb|DC948351.1|DC948351
EST:     TGCTCGTAACGAAGTACAACGGCCCTAAAACAACCATCCTTATTGACCAG                         GGTGACGCAGATAAGTTCTACAAAGAGAATCAGCTCCTGCCAGAGAATTTC
genomic: TGCTCGTAACGAAATACAACGGCCCTAAAACAACCATCCTTATTGACCAGgtccacttta ... ctacttacagGGTGACGCAGATAAGTTCTACAAAGAGAATCAGCTCCTGCCAGAGAATTTC
EST: gi|208385518|gb|DC953109.1|DC953109
EST:     TGCTCGTAACGAAATACAACGGCCCTAAAACAACCATCCTTATTGACCAG                         GGTGACGCAGATAAGTTCTACAAAGAGAATCAGCTCCTGCCAGAGAATTTC
genomic: TGCTCGTAACGAAATACAACGGCCCTAAAACAACCATCCTTATTGACCAGgtccacttta ... ctacttacagGGTGACGCAGATAAGTTCTACAAAGAGAATCAGCTCCTGCCAGAGAATTTC