1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GAGGGCTGAATGTGGAAGGGGAGTCGGATAGCTGGGATTTCGGCACAGgtacttgaaaataaatcatcagcagtatgaggcttatgtcatgtgtgaattcgtaaatactccaaaaagttctattcaatttgacgcattacgactatctgccttgttgatcacgtgaaggactttttgtgccaatgggacag
species | Physcomitrella patens |
transcript | PP1S61_17V6.2 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: GAGGGCTGAATGTGGAAGGGGAGTCGGATAGCTGGGATTTCGGCACAG GAGCCAGTTTCTACCTAAATGCCACTCAGGAGAAGTGGAAAAACTGGCGCAEST: gi|18343395|gb|BJ175433.1|BJ175433
genomic: GAGGGCTGAATGTGGAAGGGGAGTCGGATAGCTGGGATTTCGGCACAGgtacttgaaa ... aatgggacagGAGCCAGTTTCTACCTAAATGCCACTCAGGAGAAGTGGAAAAACTGGCGCA
EST: GAGGGNTGAATGTGGAAGGGGAGTCGGATAGCTGGGATTTCGGCACAG GAGCCAGTTTCTACCTAAATGCCNCTCAGGAGAAGTGGAAAAACTGGCGCAEST: gi|67719202|gb|BJ969461.1|BJ969461
genomic: GAGGGCTGAATGTGGAAGGGGAGTCGGATAGCTGGGATTTCGGCACAGgtacttgaaa ... aatgggacagGAGCCAGTTTCTACCTAAATGCCACTCAGGAGAAGTGGAAAAACTGGCGCA
EST: GAGGGCTGAATGTGGAAGGGGAGTCGGATAGCTGGGATTTCGGCACAG GAGCCAGTTTCTACCTAAATGCCACTCAGGAGAAGTGGAAAAACTGGCGCAEST: gi|208380226|gb|DC919062.1|DC919062
genomic: GAGGGCTGAATGTGGAAGGGGAGTCGGATAGCTGGGATTTCGGCACAGgtacttgaaa ... aatgggacagGAGCCAGTTTCTACCTAAATGCCACTCAGGAGAAGTGGAAAAACTGGCGCA
EST: GCTGAATGTGGAAGGGGAGTCGGATAGCTGGGATTTCGGCACAG GAGCCAGTTTCTACCTAAATGCCACTCAGGAGAAGTGGAAAAACTGGCGCAEST: gi|208381483|gb|DC919485.1|DC919485
genomic: GCTGAATGTGGAAGGGGAGTCGGATAGCTGGGATTTCGGCACAGgtacttgaaa ... aatgggacagGAGCCAGTTTCTACCTAAATGCCACTCAGGAGAAGTGGAAAAACTGGCGCA
EST: GAGGGCTGAATGTGGAAGGGGAGTCGGATAGCTGGGATTTCGGCACAG GAGCCAGTTTCTACCTAAATGCCACTCAGGAGAAGTGGAAAAACTGGCGCAEST: gi|162192829|gb|FC370161.1|FC370161
genomic: GAGGGCTGAATGTGGAAGGGGAGTCGGATAGCTGGGATTTCGGCACAGgtacttgaaa ... aatgggacagGAGCCAGTTTCTACCTAAATGCCACTCAGGAGAAGTGGAAAAACTGGCGCA
EST: GAGGGCTGAATGTGGAAGGGGAGTCGGATAGCTGGGATTTCGGCACAG GAGCCGGTTTCTACCTAAATGCCACTCAGGAGAAGTGGAAAAACTGGCGCAEST: gi|67727505|gb|BJ977764.1|BJ977764
genomic: GAGGGCTGAATGTGGAAGGGGAGTCGGATAGCTGGGATTTCGGCACAGgtacttgaaa ... aatgggacagGAGCCAGTTTCTACCTAAATGCCACTCAGGAGAAGTGGAAAAACTGGCGCA
EST: GAGGGCTGAATGTGGAAGGGGAGTCGGATAGCTGGGATTTCGGCACAG GAGCCAGTTTCTACCTAAATGCCACTCAGGAGAAGTGGAAAAACTGGCGCAEST: gi|208350927|gb|DC910474.1|DC910474
genomic: GAGGGCTGAATGTGGAAGGGGAGTCGGATAGCTGGGATTTCGGCACAGgtacttgaaa ... aatgggacagGAGCCAGTTTCTACCTAAATGCCACTCAGGAGAAGTGGAAAAACTGGCGCA
EST: GANGGCTGAATGTGGAAGGGGAGTCNGATAGCTGGGATT-CGGCACAG GAGCCAGTTTCTACCTAAEST: gi|208348165|gb|DC920956.1|DC920956
genomic: GAGGGCTGAATGTGGAAGGGGAGTCGGATAGCTGGGATTTCGGCACAGgtacttgaaa ... aatgggacagGAGCCAGTTTCTACCTAA
EST: GAGGGCTGAATGTGGAAGGGGAGTCGGATAGCTGGGATTTCGGCACAG GAGCCAGTTTCTACNTAAATGCCACTCAGGAGAAGTGGAAAAACTGGCGCAEST: gi|100394127|gb|BY971952.1|BY971952
genomic: GAGGGCTGAATGTGGAAGGGGAGTCGGATAGCTGGGATTTCGGCACAGgtacttgaaa ... aatgggacagGAGCCAGTTTCTACCTAAATGCCACTCAGGAGAAGTGGAAAAACTGGCGCA
EST: GAGGGCTGAATGTGGAAGGGGAGTCGGATAGCTGGGATTTCGGCACAG GAGCCAGTTTCTACCTAAATGCCACTCAGGAGAAGTGGAAAAACTGGCGCAEST: gi|208396633|gb|DC924301.1|DC924301
genomic: GAGGGCTGAATGTGGAAGGGGAGTCGGATAGCTGGGATTTCGGCACAGgtacttgaaa ... aatgggacagGAGCCAGTTTCTACCTAAATGCCACTCAGGAGAAGTGGAAAAACTGGCGCA
EST: GAGGGCTGAATGTGGNAGGGGAGTCGGATAGCTGGGATTTCGGCACAG GAGCCAGTTTCTACCTAAATGCCACTCAGGAGAAGTGGAAAAACTGGCGCAEST: gi|100421061|gb|BY993592.1|BY993592
genomic: GAGGGCTGAATGTGGAAGGGGAGTCGGATAGCTGGGATTTCGGCACAGgtacttgaaa ... aatgggacagGAGCCAGTTTCTACCTAAATGCCACTCAGGAGAAGTGGAAAAACTGGCGCA
EST: GAGGGCTGAATGTGGAAGGGGAGTCGGATAGCTGGGATTTCGGCACAG GAGCCAGTTTCTACCTAAATGCCACTCAGGAGAAGTGGAAAAACTGGCGCAEST: gi|100383603|gb|BY950387.1|BY950387
genomic: GAGGGCTGAATGTGGAAGGGGAGTCGGATAGCTGGGATTTCGGCACAGgtacttgaaa ... aatgggacagGAGCCAGTTTCTACCTAAATGCCACTCAGGAGAAGTGGAAAAACTGGCGCA
EST: GAGGGCTGAATGTGGAAGGGGAGTCGGATAGCTGGGATTTCGGCACAG GAGCCAGTTTCTACCTTAATGCCACTCAGGAAAAGTGGAAAA-CTGGCGCAEST: gi|208345645|gb|DC905603.1|DC905603
genomic: GAGGGCTGAATGTGGAAGGGGAGTCGGATAGCTGGGATTTCGGCACAGgtacttgaaa ... aatgggacagGAGCCAGTTTCTACCTAAATGCCACTCAGGAGAAGTGGAAAAACTGGCGCA
EST: GAGGGCTGAATGTGGAAGGGGAGTCGGATAGCTGGGATTTCGGCACAG GAGCCAGTTTCTACCTAAATGCCACTCAGGAGAAGTGGAAAAACTGGCGCAEST: gi|162267025|gb|FC443074.1|FC443074
genomic: GAGGGCTGAATGTGGAAGGGGAGTCGGATAGCTGGGATTTCGGCACAGgtacttgaaa ... aatgggacagGAGCCAGTTTCTACCTAAATGCCACTCAGGAGAAGTGGAAAAACTGGCGCA
EST: GAGGGCTGAATGTGGAAGGGGAGTCGGATAGCTGGGATTTCGGCACAG GAGCCAGTTTCTACCTAAATGCCACTCAGGAGAAGTGGAAAAACTGGCGCAEST: gi|162267024|gb|FC443073.1|FC443073
genomic: GAGGGCTGAATGTGGAAGGGGAGTCGGATAGCTGGGATTTCGGCACAGgtacttgaaa ... aatgggacagGAGCCAGTTTCTACCTAAATGCCACTCAGGAGAAGTGGAAAAACTGGCGCA
EST: GAGGGCTGAATGTGGAAGGGGAGTCGGATAGCTGGGATTTCGGCACAG GAGCCAGTTTCTACCTAAATGCCACTCAGGAGAAGTGGAAAAACTGGCGCAEST: gi|67694518|gb|BJ954751.1|BJ954751
genomic: GAGGGCTGAATGTGGAAGGGGAGTCGGATAGCTGGGATTTCGGCACAGgtacttgaaa ... aatgggacagGAGCCAGTTTCTACCTAAATGCCACTCAGGAGAAGTGGAAAAACTGGCGCA
EST: GAGGGCTGAATGTGGAAGGGGAGTCGGATAGCTGGGATTTCGGCACAG GAGCCAGTTTCTACCTAAATGCCACTCAGGAGAAGTGGAAAAACTGGCGCAEST: gi|208384596|gb|DC907083.1|DC907083
genomic: GAGGGCTGAATGTGGAAGGGGAGTCGGATAGCTGGGATTTCGGCACAGgtacttgaaa ... aatgggacagGAGCCAGTTTCTACCTAAATGCCACTCAGGAGAAGTGGAAAAACTGGCGCA
EST: GAGGGCTGAATGTGGAAGGGGAGTCGGATAGCTGGGATTTCGGCACAG GAGCCAGTTTCTACCTAAATGCCACTCAGGAGAAGTGGAAAAACTGGCGCAEST: gi|208344728|gb|DC905177.1|DC905177
genomic: GAGGGCTGAATGTGGAAGGGGAGTCGGATAGCTGGGATTTCGGCACAGgtacttgaaa ... aatgggacagGAGCCAGTTTCTACCTAAATGCCACTCAGGAGAAGTGGAAAAACTGGCGCA
EST: GAGGGCTGAATGTGGAAGGGGAGTCGGATAGCTGGGATTTCGGCACAG GAGCCAGTTTCTACCTAAATGCCACTCAGGAGAAGTGGAAAAACTGGCGCAEST: gi|208371948|gb|DC948351.1|DC948351
genomic: GAGGGCTGAATGTGGAAGGGGAGTCGGATAGCTGGGATTTCGGCACAGgtacttgaaa ... aatgggacagGAGCCAGTTTCTACCTAAATGCCACTCAGGAGAAGTGGAAAAACTGGCGCA
EST: GAGGGCTGAATGTGGAAGGGGAGTCGGATAGCTGGGATTTCGGCACAG GAGCCAGTTTCTACNTAAATGCCACTCAGGAGAAGTGGAAAANCTGGCGCA
genomic: GAGGGCTGAATGTGGAAGGGGAGTCGGATAGCTGGGATTTCGGCACAGgtacttgaaa ... aatgggacagGAGCCAGTTTCTACCTAAATGCCACTCAGGAGAAGTGGAAAAACTGGCGCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAGGGCTGAATGTGGAAGGGGAGTCGGATAGCTGGGATTTCGGCACAGgtacttgaaaataaatcatcagcagtatgaggcttatgtcatgtgtgaattcgtaaatactccaaaaagttctattcaatttgacgcattacgactatctgccttgttgatcacgtgaaggactttttgtgccaatgggacag
- - - - - - TGGAAG