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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tgatgcgtattgcaatccatggctatcctgagtgtagagcaggttgcctcgctctcaagaaagtgatgcttttacttctgctgacagaattttgtggcagAGGAGAGCGGCTAGCATGGAGTTTCCGTCTGTATTGTTGTTTCCCGAGGGCACAACAACGAATGGGAGGTCACTGATTTCATTTAAGCCGGGCGCATTTG

Basic information

species Physcomitrella patens
transcript PP1S61_131V6.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162172253|gb|FC348818.1|FC348818
EST:     TCGACAGAACGTCTGCTGAATCGAGAAAGTCTGCAACAGCTGAAATCAAA                         AGGAGAGCGGCTAGCATGGAGTTTCCGTCTGTATTG
genomic: TCGACAGAACGTCTGCTGAATCGAGAAAGTCTGCAACAGCTGAAATCAAAgtattgtttt ... tttgtggcagAGGAGAGCGGCTAGCATGGAGTTTCCGTCTGTATTG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcctcgctctcaagaaagtgatgcttttacttctgctgacagaattttgtggcagAGGAGAGCGGCTAGCATGGAGTTTCCGTCTGTATTGTTGTTTCCCGAGGGCACAACAACGAATGGGAGGTCACTGATTTCATTTAAGCCGGGCGCATTTG
                                 tgctgac  putative branch site (score: 2)
                        ttttactt  TA-rich tract