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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tttcgacttttcctccctgaaaatactgtaacactgcctgaagagcgaaccacgatttgatggatcagagcttaacaacacgcgatcctggtctgtgtagAACACCATCCCAGACAGAGCCGTTTCGGTAGAGGAGTGTGAAGACCTCTTGCGGAACACTTTAAACATCGGATTGGCGTACCGGATGCCCATTTCATAAA

Basic information

species Physcomitrella patens
transcript PP1S61_118V6.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162279859|gb|FC455143.1|FC455143
EST:     TCATGCTCATCTTCATAGAGGATAGCCTCCGCACCTTGTACATATTCCTG                         AACACCATCCCAGACAGAGCCGTTTCGGTAGAGGAGTGTGAAGACCTCTTG
genomic: TCATGCTCATCTTCATAGAGGATAGCCTCCGCACCTTGTACATATTCCTGgtgagaatcc ... gtctgtgtagAACACCATCCCAGACAGAGCCGTTTCGGTAGAGGAGTGTGAAGACCTCTTG
EST: gi|162279858|gb|FC455142.1|FC455142
EST:     TCATGCTCATCTTCATAGAGGATAGCCTCCGCACCTTGTACATATTCCTG                         AACACCATCCCAGACAGAGCCGTTTCGGTAGAGGAGTGTGAAGACCTCTTG
genomic: TCATGCTCATCTTCATAGAGGATAGCCTCCGCACCTTGTACATATTCCTGgtgagaatcc ... gtctgtgtagAACACCATCCCAGACAGAGCCGTTTCGGTAGAGGAGTGTGAAGACCTCTTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cgaaccacgatttgatggatcagagcttaacaacacgcgatcctggtctgtgtagAACACCATCCCAGACAGAGCCGTTTCGGTAGAGGAGTGTGAAGACCTCTTGCGGAACACTTTAAACATCGGATTGGCGTACCGGATGCCCATTTCATAAA
                        gcttaac  putative branch site (score: 3)
         atttgat  TA-rich tract