Sequence
atgc intronic sequence ATGC exonic sequence...gttgagtgcagctctggaaattatagtattccttttgctgggcgtgaaaaactttgacaatatcctctaaactgtaggttacttggtggtggttgtgcagCAATTTGACAAGGCGTATGGTTCAGGGTGGCAATGTATAACTGGTGTAAGCTTTGGATCCTACGTAACGCACTCTTCGGGTTCATTTATCCACTTCTGTC
Basic information
species | Physcomitrella patens |
transcript | PP1S61_117V6.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|18336198|gb|BJ168220.1|BJ168220EST: ATATTCATGAGGGCACCGATTACAAAGACGTTGCTTACTACATCAAGAAT CAATTTGACAAGGCGTATGGTTCAGGGTGGCAATGTATAACTGGTGTAAGC
genomic: ATATTCATGAGGGCACCGATTACAAAGACGTTGCTTACTACATCAAGAATgtaaacttct ... ggttgtgcagCAATTTGACAAGGCGTATGGTTCAGGGTGGCAATGTATAACTGGTGTAAGC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gaaaaactttgacaatatcctctaaactgtaggttacttggtggtggttgtgcagCAATTTGACAAGGCGTATGGTTCAGGGTGGCAATGTATAACTGGTGTAAGCTTTGGATCCTACGTAACGCACTCTTCGGGTTCATTTATCCACTTCTGTC
ctctaaa putative branch site (score: 3)
acaatat TA-rich tract