1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
CCATACTCGATTGCTCATTGAAGACTTCATAGCCCATTTTGATGATTGTCTTGGATGATTCGTGAAGCTGGTGGAAGGGCTTCGTGACATACAGGGCCAGgttcctgagctgctaatactcgttaccttgctgctggattgttttcgctgctttgtatgtttgtggaattgggttgtgccagggtagctgatttccatgg...
species | Physcomitrella patens |
transcript | PP1S61_112V6.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TTGGATGATTCGTGAAGCTGGTGGAAGGGCTTCGTGACATACAGGGCCAG CEST: gi|18325546|gb|BJ157543.1|BJ157543
genomic: TTGGATGATTCGTGAAGCTGGTGGAAGGGCTTCGTGACATACAGGGCCAGgttcctgagc ... tgtacagcag-
EST: TTGGATGATTCGTGAAGCTGGTGGAAGGGCTTCGTGACATACAGGGCCAG CEST: gi|18325546|gb|BJ157543.1|BJ157543
genomic: TTGGATGATTCGTGAAGCTGGTGGAAGGGCTTCGTGACATACAGGGCCAGgttcctgagc ... tgtacagcag-
EST: TTGGATGATTCGTGAAGCTGGTGGAAGGGCTTCGTGACATACAGGGCCAG CEST: gi|208376453|gb|DC902750.1|DC902750
genomic: TTGGATGATTCGTGAAGCTGGTGGAAGGGCTTCGTGACATACAGGGCCAGgttcctgagc ... tgtacagcag-
EST: TTGGATGATTCGTGAAGCTGGTGGAAGGGCTTCGTGACATACAGGGCCAG CEST: gi|208376453|gb|DC902750.1|DC902750
genomic: TTGGATGATTCGTGAAGCTGGTGGAAGGGCTTCGTGACATACAGGGCCAGgttcctgagc ... tgtacagcag-
EST: TTGGATGATTCGTGAAGCTGGTGGAAGGGCTTCGTGACATACAGGGCCAG CEST: gi|208376453|gb|DC902750.1|DC902750
genomic: TTGGATGATTCGTGAAGCTGGTGGAAGGGCTTCGTGACATACAGGGCCAGgttcctgagc ... tgtacagcag-
EST: TTGGATGATTCGTGAAGCTGGTGGAAGGGCTTCGTGACATACAGGGCCAG CEST: gi|162153960|gb|FC329467.1|FC329467
genomic: TTGGATGATTCGTGAAGCTGGTGGAAGGGCTTCGTGACATACAGGGCCAGgttcctgagc ... tgtacagcag-
EST: TTGGATGATTCGTGAAGCTGGTGGAAGGGCTTCGTGACATACAGGGCCAG GAGTAGGACGAAAGAGTTTCGATTTCAATGTCCGCCGCCAGCTTGTTCTGCEST: gi|100376203|gb|BY986072.1|BY986072
genomic: TTGGATGATTCGTGAAGCTGGTGGAAGGGCTTCGTGACATACAGGGCCAGgttcctgagc ... tgtacagcagGAGTAGGACGAAAGAGTTTCGATTTCAATGTCCGCCGCCAGCTTGTTCTGC
EST: TTGGATGATTCGTGAAGCTGGTGGAAGGGCTTCGTGACATACAGGGCCAG GAGTAGGACGAAAGAGTTTCGATTTCAATGTCCGCCGCCAGCTTGTTCTGCEST: gi|18332323|gb|BJ164336.1|BJ164336
genomic: TTGGATGATTCGTGAAGCTGGTGGAAGGGCTTCGTGACATACAGGGCCAGgttcctgagc ... tgtacagcagGAGTAGGACGAAAGAGTTTCGATTTCAATGTCCGCCGCCAGCTTGTTCTGC
EST: TTGGATGATTCGTGAAGCTGGTGGAAGGGCTTCGTGACATACAGGGCCAG GAGTAGGACGAAAGAGTTTCGATTTCAATGTCCGCCGCCAGCTTGTTCTGCEST: gi|208371195|gb|DC931613.1|DC931613
genomic: TTGGATGATTCGTGAAGCTGGTGGAAGGGCTTCGTGACATACAGGGCCAGgttcctgagc ... tgtacagcagGAGTAGGACGAAAGAGTTTCGATTTCAATGTCCGCCGCCAGCTTGTTCTGC
EST: TTGGATGATTCGTGAAGCTGGTGGAAGGGCTTCGTGACATACAGGGCCAG GAGTAGGACGAAAGAGTTTCGATTTCAATGTCCGCCGCCAGCTTGTTCTGCEST: gi|18373593|gb|BJ205171.1|BJ205171
genomic: TTGGATGATTCGTGAAGCTGGTGGAAGGGCTTCGTGACATACAGGGCCAGgttcctgagc ... tgtacagcagGAGTAGGACGAAAGAGTTTCGATTTCAATGTCCGCCGCCAGCTTGTTCTGC
EST: TTGGATGATTCGTGAAGCTGGTGGAAGGGCTTCGTGACATACAGGGCCAG GAGTAGGACGAAAGAGTTTCGATTTCAATGTCCGCCGCCAGCTTGTTCTGCEST: gi|208385210|gb|DC911414.1|DC911414
genomic: TTGGATGATTCGTGAAGCTGGTGGAAGGGCTTCGTGACATACAGGGCCAGgttcctgagc ... tgtacagcagGAGTAGGACGAAAGAGTTTCGATTTCAATGTCCGCCGCCAGCTTGTTCTGC
EST: TTGGATGATTCGTGAAGCTGGTGGAAGGGCTTCGTGACATACAGGGCCAGCAGEST: gi|18359419|gb|BJ191480.1|BJ191480
genomic: TTGGATGATTCGTGAAGCTGGTGGAAGGGCTTCGTGACATACAGGG-C--CAGgttcctgagc ... tgtacagc
EST: TTGGATGATTCGTGAAGCTGGTGGAAGGGCTTCGTGACATACAGGGCCAG CEST: gi|18359419|gb|BJ191480.1|BJ191480
genomic: TTGGATGATTCGTGAAGCTGGTGGAAGGGCTTCGTGACATACAGGGCCAGgttcctgagc ... tgtacagcag-
EST: TTGGATGATTCGTGAAGCTGGTGGAAGGGCTTCGTGACATACAGGGCCAG CEST: gi|18359419|gb|BJ191480.1|BJ191480
genomic: TTGGATGATTCGTGAAGCTGGTGGAAGGGCTTCGTGACATACAGGGCCAGgttcctgagc ... tgtacagcag-
EST: TTGGATGATTCGTGAAGCTGGTGGAAGGGCTTCGTGACATACAGGGCCAG CEST: gi|162245923|gb|FC420811.1|FC420811
genomic: TTGGATGATTCGTGAAGCTGGTGGAAGGGCTTCGTGACATACAGGGCCAGgttcctgagc ... tgtacagcag-
EST: TTGGATGATTCGTGAAGCTGGTGGAAGGGCTTCGTGACATACAGGGCCAG GAGTAGGACGAAAGAGTTTCGATTTCAATGTCCGCCGCCAGCTTGTTCTGCEST: gi|18330164|gb|BJ162170.1|BJ162170
genomic: TTGGATGATTCGTGAAGCTGGTGGAAGGGCTTCGTGACATACAGGGCCAGgttcctgagc ... tgtacagcagGAGTAGGACGAAAGAGTTTCGATTTCAATGTCCGCCGCCAGCTTGTTCTGC
EST: TTGGATGATTCGTGAAGCTGGTGGAAGGGCTTCGTGACATACAGGGCCAG CEST: gi|18330164|gb|BJ162170.1|BJ162170
genomic: TTGGATGATTCGTGAAGCTGGTGGAAGGGCTTCGTGACATACAGGGCCAGgttcctgagc ... tgtacagcag-
EST: TTGGATGATTCGTGAAGCTGGTGGAAGGGCTTCGTGACATACAGGGCCAG CEST: gi|18330164|gb|BJ162170.1|BJ162170
genomic: TTGGATGATTCGTGAAGCTGGTGGAAGGGCTTCGTGACATACAGGGCCAGgttcctgagc ... tgtacagcag-
EST: TTGGATGATTCGTGAAGCTGGTGGAAGGGCTTCGTGACATACAGGGCCAG CEST: gi|100449571|gb|CJ973826.1|CJ973826
genomic: TTGGATGATTCGTGAAGCTGGTGGAAGGGCTTCGTGACATACAGGGCCAGgttcctgagc ... tgtacagcag-
EST: TTGGATGATTCGTGAAGCTGGTGGAAGGGCTTCGTGACATACAGGGCCAG GAGTAGGACGAAAGAGTTTCGATTTCAATGTCCGCCGCCAGCTTGTTCTGCEST: gi|18367488|gb|BJ199571.1|BJ199571
genomic: TTGGATGATTCGTGAAGCTGGTGGAAGGGCTTCGTGACATACAGGGCCAGgttcctgagc ... tgtacagcagGAGTAGGACGAAAGAGTTTCGATTTCAATGTCCGCCGCCAGCTTGTTCTGC
EST: TTGGATGATTCGTGAAGCTGGTGGAAGGGCTTCGTGACATACAGGGCCAG CEST: gi|18367488|gb|BJ199571.1|BJ199571
genomic: TTGGATGATTCGTGAAGCTGGTGGAAGGGCTTCGTGACATACAGGGCCAGgttcctgagc ... tgtacagcag-
EST: TTGGATGATTCGTGAAGCTGGTGGAAGGGCTTCGTGACATACAGGGCCAG CEST: gi|18367488|gb|BJ199571.1|BJ199571
genomic: TTGGATGATTCGTGAAGCTGGTGGAAGGGCTTCGTGACATACAGGGCCAGgttcctgagc ... tgtacagcag-
EST: TTGGATGATTCGTGAAGCTGGTGGAAGGGCTTCGTGACATACAGGGCCAG CEST: gi|100436177|gb|BY979418.1|BY979418
genomic: TTGGATGATTCGTGAAGCTGGTGGAAGGGCTTCGTGACATACAGGGCCAGgttcctgagc ... tgtacagcag-
EST: TTGGATGATTCGTGAAGCTGGTGGAAGGGCTTCGTGACATACAGGGCCAG CEST: gi|100436177|gb|BY979418.1|BY979418
genomic: TTGGATGATTCGTGAAGCTGGTGGAAGGGCTTCGTGACATACAGGGCCAGgttcctgagc ... tgtacagcag-
EST: TTGGATGATTCGTGAAGCTGGTGGAAGGGCTTCGTGACATACAGGGCCAG CEST: gi|100436177|gb|BY979418.1|BY979418
genomic: TTGGATGATTCGTGAAGCTGGTGGAAGGGCTTCGTGACATACAGGGCCAGgttcctgagc ... tgtacagcag-
EST: TTGGATGATTCGTGAAGCTGGTGGAAGGGCTTCGTGACATACAGGGCCAG CEST: gi|100415960|gb|BY957009.1|BY957009
genomic: TTGGATGATTCGTGAAGCTGGTGGAAGGGCTTCGTGACATACAGGGCCAGgttcctgagc ... tgtacagcag-
EST: TTGGATGATTCGTGAAGCTGGTGGAAGGGCTTCGTGACATACAGGGCCAGCAGEST: gi|100449948|gb|CJ974017.1|CJ974017
genomic: TTGGATGATTCGTGAAGCTGGTGGAAGGGCTTCGTGACATACAGGG-C--CAGgttcctgagc ... tgtacagc
EST: TTGGATGATTCGTGAAGCTGGTGGAAGGGCTTCGTGACATACAGGGCCAGCAGEST: gi|162191379|gb|FC368162.1|FC368162
genomic: TTGGATGATTCGTGAAGCTGGTGGAAGGGCTTCGTGACATACAGGG-C--CAGgttcctgagc ... tgtacagc
EST: TTGGATGATTCGTGAAGCTGGTGGAAGGGCTTCGTGACATACAGGGCCAG GAGTAGGACGAAAGAGTTTCGATTTCAATGTCCGCCGCCAGCTTGTTCTGCEST: gi|67571782|gb|BJ944606.1|BJ944606
genomic: TTGGATGATTCGTGAAGCTGGTGGAAGGGCTTCGTGACATACAGGGCCAGgttcctgagc ... tgtacagcagGAGTAGGACGAAAGAGTTTCGATTTCAATGTCCGCCGCCAGCTTGTTCTGC
EST: TTGGATGATTCGTGAAGCTGGTGGAAGGGCTTCGTGACATACAGGGCCAGCAGEST: gi|18367178|gb|BJ199259.1|BJ199259
genomic: TTGGATGATTCGTGAAGCTGGTGGAAGGGCTTCGTGACATACAGGG-C--CAGgttcctgagc ... tgtacagc
EST: TTGGATGATTCGTGAAGCTGGTGGAAGGGCTTCGTGACATACAGGGCCAG CEST: gi|18367178|gb|BJ199259.1|BJ199259
genomic: TTGGATGATTCGTGAAGCTGGTGGAAGGGCTTCGTGACATACAGGGCCAGgttcctgagc ... tgtacagcag-
EST: TTGGATGATTCGTGAAGCTGGTGGAAGGGCTTCGTGACATACAGGGCCAG CEST: gi|18367178|gb|BJ199259.1|BJ199259
genomic: TTGGATGATTCGTGAAGCTGGTGGAAGGGCTTCGTGACATACAGGGCCAGgttcctgagc ... tgtacagcag-
EST: TTGGATGATTCGTGAAGCTGGTGGAAGGGCTTCGTGACATACAGGGCCAG C
genomic: TTGGATGATTCGTGAAGCTGGTGGAAGGGCTTCGTGACATACAGGGCCAGgttcctgagc ... tgtacagcag-
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCATACTCGATTGCTCATTGAAGACTTCATAGCCCATTTTGATGATTGTCTTGGATGATTCGTGAAGCTGGTGGAAGGGCTTCGTGACATACAGGGCCAGgttcctgagctgctaatactcgttaccttgctgctggattgttttcgctgctttgtatgtttgtggaattgggttgtgccagggtagctgatttccatgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG