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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCCTGCTCAAAATGTTGAGAGTTCACAGTGCATCACCATGATGGAGGCAGTGAATGATGGTCAAGACTTGCATGTTTCTGTCACTATGCCTTCCATTGAGgtgtgcgactttctgtaaagccgtccttttcctgtgcagtttttgagaactgcatgttgtgaacacttctcaggtcctagaccctcattgttcaattgtttgtttgtttgttcatgacaagcttcttacgttccatgttgatgctctttgcag

Basic information

species Physcomitrella patens
transcript PP1S61_10V6.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S61_10V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: LOC_Os02g48330.1 (Oryza sativa), 5'ss of exon 4
TCCTGCTCAAAATGTTGAGAGTTCACAGTGCATCACCATGATGGAGGCAGTGAATGATGGTCAAGACTTGCATGTTTCTGTCACTATGCCTTCCATTGAGgtgtgcgactttctgtaaagccgtccttttcctgtgcagtttttgagaactgcatgttgtgaacacttctcaggtcctagaccctcattgttcaattgtttgtttgtttgttcatgacaagcttcttacgttccatgttgatgctctttgcag
|||||| ||||||||||| || ||||| |||||||||||| |||| | ||| ||||||||  | ||  | ||| | |||||||| ||||| ||||||||||||      | |  ||    |  ||| || |||       || ||   | |  |      | | |     |  | | || |       ||   |||   | |  |                                                
TCCTGCACAAAATGTTGAAAGCTCACAATGCATCACCATGTTGGAAGAAGTAAATGATGGAGATGATCTTCATATCTCTGTCACCATGCCGTCCATTGAGgtgattatttattcgttttactttccgtt-cctacctgcattatgtagattata------gcataacctgctagccttaaatgga-gctgcaaaatctatagcataga---------------------------------------------

upper sequence: PP1S61_10V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: GRMZM2G136465_T01 (Zea mays), 5'ss of exon 4
TCCTGCTCAAAATGTTGAGAGTTCACAGTGCATCACCATGATGGAGGCAGTGAATGATGGTCAAGACTTGCATGTTTCTGTCACTATGCCTTCCATTGAGgtg-tgcgactttc--------tgtaaagccgtccttttcctgtgcagtttttgagaactgcatg-----ttgtgaac--acttctcaggtcctagaccctcattgttcaattgtt-----tgtttgtttgttcatgacaagct----tcttacgttccatgttgatgctct-ttgcag------------------
|||||| ||||||||||| || || |||||||| ||||||||||||||||||||||||||    ||| | || |||||||| || |||||||| ||||||||  |  || ||||        || || |   |    ||  |    |||  |  | | || | |      || ||||   |||   |   |  |    ||  ||  || | || ||     || || | | ||  |||   | |    |      ||   ||   |   ||| |   ||                  
TCCTGCCCAAAATGTTGAAAGCTCGCAGTGCATAACCATGATGGAGGCAGTGAATGATGGAAGTGACCTTCACGTTTCTGTGACCATGCCTTCTATTGAGgtactatgattttcgtgctctgtgcaatgttatagactttatagttagtactaaaaagcttcgttggaatttatgaaatgactatccccattatccttccagatcttttacttattcctcgtgcttttatatttgtgatctgatcgaatgccgtattttgtgcgaacaatctgtcttagtaacctgtcccttctcag

upper sequence: PP1S61_10V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: GRMZM2G135085_T01 (Zea mays), 5'ss of exon 3
TCCTGCTCAAAATGTTGAGAGTTCACAGTGCATCACCATGATGGAGGCAGTGAATGATGGTCAAGACTTGCATGTTTCTGTCACTATGCCTTCCATTGAGgtgtgcgactttctgtaaagccgtccttt---tcctgtgcagtttt-tgagaactgcatgttgtgaacacttctcaggtcctagacc-----ctcattgttcaattgtttgtttgtttg--ttcatgacaagcttcttacgt-tccatgttgat--gctctttgcag------
|||||| || || ||||| || ||||||||||||||||||||||||||||||||||| ||    ||  | ||  | ||||| || |||||||||||||||||  | |  | |  | | |    | |  |   |  | |  |||||| |  ||| |  |        |  |   |    | | |||       ||||||  ||     ||| ||| |     || ||   | || | || ||| || ||  | ||  |  |  | ||       
TCCTGCCCAGAACGTTGAAAGCTCACAGTGCATCACCATGATGGAGGCAGTGAATGACGGAGGCGATCTTCACATCTCTGTGACCATGCCTTCCATTGAGgtaag-gcttataggcatactgatacagttagtattataaagttttgttggaattataaaaccaatagcccattatccttccagattatttgctcattcctcgtgcttttatttctcccatttgatcgaatgcgtatttcgtgtcaataataatttgtccactccattctcag

upper sequence: PP1S61_10V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: GLYMA11G09330.1 (Glycine max), 5'ss of exon 3
TCCTGCTCAAAATGTTGAGAGTTCACAGTGCATCACCATGATGGAGGCAGTGAATGATGGTCAAGACTTGCATGTTTCTGTCACTATGCCTTCCATTGAGgtgtgcgactttctgtaaagccgtccttttcctgtgcagtttttgagaactgcatgttgtgaacacttctcaggtcctagaccctcattgttcaattgtttgtttgtttgttcatgacaagcttcttacgttccatgttgatgctctttgcag
 |||||||| ||||| |||||||| || ||||| || |||||||| || |||||||||||  | ||| | ||  | ||||| |||||||||||||||||||| |||    ||   |||   | |  ||||  | |  | || |||        ||||| | |     | | |  |  |||       || ||    |  |   | |                                               
CCCTGCTCAGAATGTGGAGAGTTCTCACTGCATAACTATGATGGAAGCTGTGAATGATGGCAAGGACCTTCACATCTCTGTTACTATGCCTTCCATTGAGgtatgcccaattaactaattac-ttattttggtcttaaattcttgt------tatgttttaatgctctttaatatgttaggggtgactttttagtatagtaaataga----------------------------------------------

upper sequence: PP1S61_10V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: GLYMA01G36080.1 (Glycine max), 5'ss of exon 3
TCCTGCTCAAAATGTTGAGAGTTCACAGTGCATCACCATGATGGAGGCAGTGAATGATGGTCAAGACTTGCATGTTTCTGTCACTATGCCTTCCATTGAGgtgtgcgactttctgtaaagccgtccttttcctgtgcagtttttgagaactgcatgttgtgaacacttctcaggtcctagaccctcattgttcaattgtttgtttgtttgttcatgacaagcttcttacgttccatgttgatgctctttgcag
 |||||||| ||||| |||||||| || ||||| ||||||||||| || |||||||||||  | ||| | ||  | ||||| |||||||||||| ||||||| |||     |   | ||    |  ||||  | |  | || |||        ||| | | |     | |||   | |||         |    | | ||  ||    |   ||  | |                                  
CCCTGCTCAGAATGTGGAGAGTTCTCACTGCATAACCATGATGGAAGCTGTGAATGATGGCAAGGACCTTCACATCTCTGTTACTATGCCTTCCCTTGAGgtatgc-----ttaattaattacttattttggtcttaaattcttgt------tatgctttaatgctctttcattacttag---------gggtgactcttcattatagtaaacagaatag---------------------------------

upper sequence: PP1S61_10V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: GLYMA09G32850.1 (Glycine max), 5'ss of exon 7
TCCTGCTCAAAATGTTGAGAGTTCACAGTGCATCACCATGATGGAGGCAGTGAATGATGGTCAAGACTTGCATGTTTCTGTCACTATGCCTTCCATTGAGgtgtgcgactttctgtaaagccgtccttttcctgtgcagtttttgagaactgcatgttgtgaacacttctcaggtcctagaccctcattgttcaattgtttgtttgtttgttcatgacaagcttcttacgttccatgttgatgctctttgcag
|||||| || ||||| |||||||| || ||||||||||||||||| ||  | ||||||||  | ||| | |||||||| || || ||||| |||||||||||   | ||| | | |    | |  |||     |||  ||  ||   |  |  | ||  ||  ||  | | | ||  | ||   |   |||   | |   | | ||   |                                           
TCCTGCCCAGAATGTGGAGAGTTCTCACTGCATCACCATGATGGAAGCTATCAATGATGGCAAGGACCTTCATGTTTCCGTGACCATGCCCTCCATTGAGgta--ccactgtttct----ctgatcttaaatggtgttgtcctttttaggtaga-gtattgttcatattttatgtagtggatatt---tgtctgaattagtatatgcaag-------------------------------------------

upper sequence: PP1S61_10V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: GLYMA02G44070.1 (Glycine max), 5'ss of exon 3
TCCTGCTCAAAATGTTGAGAGTTCACAGTGCATCACCATGATGGAGGCAGTGAATGATGGTCAAGACTTGCATGTTTCTGTCACTATGCCTTCCATTGAGgtgtgcgactttctgtaaagccgtccttttcctgtgcagtttttgagaactgcatgttgtgaacacttctcaggtcctagaccctcattgttcaattgtttgtttgtttgttcatgacaagcttcttacgttccatgttgatgctctttgcag
||| |||||||||||||||||||| || ||||| ||||||||||| ||  | ||||||||    ||| | ||  | || || || ||||| ||||||||||||    ||||   |   | ||   |||||| |    | | ||  |    || ||  | ||   | || ||   | | | | |     | ||  ||  ||  ||  | || ||                                        
TCCAGCTCAAAATGTTGAGAGTTCCCATTGCATAACCATGATGGAAGCCATCAATGATGGGAGGGACCTTCACATCTCAGTGACCATGCCCTCCATTGAGgtg----acttg--gcccaccccatcttttcttagatattatt--actcttgtataat-tggttaattttccaattcaatagctaaggt-ttatatgattcattattgtgctctcag------------------------------------

upper sequence: PP1S61_10V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: GLYMA20G05530.1 (Glycine max), 5'ss of exon 3
TCCTGCTCAAAATGTTGAGAGTTCACAGTGCATCACCATGATGGAGGCAGTGAATGATGGTCAAGACTTGCATGTTTCTGTCACTATGCCTTCCATTGAGgtg-tgcgactttctg-taaagccgtccttttcctgtgcagtttt-tgagaactgcatgttgtgaacacttctcaggtcctagaccctcattgttcaattgtttgtttgtttgttcatgacaagcttcttacgttccatgttgatgctctttgcag
||| ||||| ||||| |||||||| || ||||| ||||||||||| || |||||||||||   |||| | ||  | || || || ||||||||||| |||||| |    |   ||| || |    |   |||    |   ||  | || | |    ||    || |      |    | ||| |   | ||  |  | ||                                                        
TCCAGCTCAGAATGTGGAGAGTTCTCATTGCATAACCATGATGGAAGCCGTGAATGATGGCAGAGACCTTCACATCTCAGTGACCATGCCTTCCATAGAGgtgatttagcaccctgatagatttttaggttttacctaaggtcctgtgcggataaaataaaatgcattgacttt---ttctataagtt-ataatcaacttacgc----------------------------------------------------

upper sequence: PP1S61_10V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: GLYMA16G21620.1 (Glycine max), 5'ss of exon 4
TCCTGCTCAAAATGTTGAGAGTTCACAGTGCATCACCATGATGGAGGCAGTGAATGATGGTCAAGACTTGCATGTTTCTGTCACTATGCCTTCCATTGAGgtgtgcgactttctgtaaagccgtccttttcctgtgcagtttttgagaactgcatgttgtgaacacttctcaggtcctagaccctcattgttcaattgtttgtttgtttgttcatgacaagcttcttacgttccatgttgatgctctttgcag
|||||| || ||||| |||||||| || ||||||||||||||||| ||  | ||||||||  | ||| | || ||||| || || ||||| |||||||||||   | ||| | | |    | |  |||     |||  ||  ||   |  |  | ||   |  ||  | | | |   | ||   || |   | ||||  | | | |   |                                           
TCCTGCCCAGAATGTGGAGAGTTCTCACTGCATCACCATGATGGAAGCTATCAATGATGGCAAGGACCTTCACGTTTCGGTGACCATGCCCTCCATTGAGgta--ccactgtttct----ctgatcttaaatggtgttgtcctttttaggtaga-gtatagttcatattttatgaagtggatattcgtc--tgaattagtagat-gcaag-------------------------------------------

upper sequence: PP1S61_10V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: Vv04s0044g01740.t01 (Vitis vinifera), 5'ss of exon 4
TCCTGCTCAAAATGTTGAGAGTTCACAGTGCATCACCATGATGGAGGCAGTGAATGATGGTCAAGACTTGCATGTTTCTGTCACTATGCCTTCCATTGAGgtgtgcgactttctgtaaagccgtccttttcctgtgcagtttttgagaactgcatgttgtgaac-acttctcaggtcctagaccctcattgttcaattgtttgtttgtttgttcatgacaagcttcttacgttccatgttgatgctctttgcag
||||||||| ||||| ||||| || || |||||||| |||||||| || |||||||||||  | ||| | ||| | || ||||| |||||||||||||||||     |   |  | ||  || ||| ||   | |    ||  |   |   |||   |  |||  |  | | ||   ||| ||    || ||     ||  ||                                                   
TCCTGCTCAGAATGTAGAGAGCTCCCACTGCATCACGATGATGGAAGCTGTGAATGATGGGAAGGACCTTCATATCTCAGTCACCATGCCTTCCATTGAGgta---aatcattagcaacaccatccattctgt-tatgtttgcttgtagtagcagactaagaaagaaatattaga--ctaaacat--atggtatgggtgcatgcag------------------------------------------------