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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGCCGAGAAAGAGTTCAGAGTGGAAGTGGAAGCAATTGGACGCGTCCGGCATAAGAATCTGGTGCGGCTTCTAGGGTATTGCGCGGAAGGTGCTCACAGgtgaagcatttattcttcccacctggagtttttgtgtgccagcacaattctcttacacgtgcaatgctaacttcgtctctcgtggcttttgtag

Basic information

species Physcomitrella patens
transcript PP1S568_2V6.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S568_2V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: LOC_Os01g47470.1 (Oryza sativa), 5'ss of exon 3
AGGCCGAGAAAGAGTTCAGAGTGGAAGTGGAAGCAATTGGACGCGTCCGGCATAAGAATCTGGTGCGGCTTCTAGGGTATTGCGCGGAAGGTGCTCACAGgtgaagcatttattcttcccacctggagtttttgtgtg---ccagcacaattctcttacacgtgcaatgctaacttcgtctctcgtggctt--ttgtag---
| || ||||| || || ||||| ||||| ||||| || || | ||| |||||||||||||||||||| ||||| ||||| || | ||||||    |||||||||  ||||| ||| || |   |    || || ||       | |     |      | |     || | || | |  |    |    ||  ||||     
AAGCAGAGAAGGAATTTAGAGTCGAAGTTGAAGCCATCGGTCACGTTCGGCATAAGAATCTGGTGCGACTTCTGGGGTACTGTGTGGAAGGGATACACAGgtgat-catttcttcctctctgttccctttgttctgcataattaactttgctgctcagcccagtttatacgaa-tccaccatgtgcaagttcattgtgatac

upper sequence: PP1S568_2V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: GRMZM2G147051_T03 (Zea mays), 5'ss of exon 1
AGGCCGAGAAAGAGTTCAGAGTGGAAGTGGAAGCAATTGGACGCGTCCGGCATAAGAATCTGGTGCGGCTTCTAGGGTATTGCGCGGAAGGTGCTCACAGgtgaag-----catt--tatt-cttcccacctggagtt---tttgtgtgccagcacaattc-tcttacacgtgcaatgctaacttcgtctctcgtggct-tttgtag------
| ||||||   |||||||| ||||| ||||| || || || ||||||||||| ||||||||||| ||||| || || || ||||| || || || ||  |||  ||     ||||  |||| ||||   | | | | |   ||| ||| |  || |    | || |||   | |    ||| ||         | || |  ||||        
AAGCCGAGCGGGAGTTCAGGGTGGAGGTGGAGGCCATCGGCCGCGTCCGGCACAAGAATCTGGTCCGGCTACTGGGCTACTGCGCCGAGGGCGCCCAACGgtacagaagtgcattattattgcttcttgctttgtggtaaatttttgttcgtgcgctgcgcatcgtacctctacggctctacctaacctaaatgcggttgcttgtgatcccag

upper sequence: PP1S568_2V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: GRMZM2G026301_T01 (Zea mays), 5'ss of exon 3
AGGCCGAGAAAGAGTTCAGAGTGGAAGTGGAAGCAATTGGACGCGTCCGGCATAAGAATCTGGTGCGGCTTCTAGGGTATTGCGCGGAAGGTGCTCACAGgtgaagcatttattcttcccacctggagtttttgtgtgccagcacaattctcttacacgtgcaatgctaacttcgtctctcgtggcttttgtag---------
| || || || |||||||| || ||||| || ||||||||||  ||| ||||||||||||| || || ||||| || ||||||| ||| ||    ||||||||||||   | ||||   ||  || | |    |   |  ||     ||||||||     ||     ||  |  ||  ||  | | | |||            
AAGCAGAAAAGGAGTTCAGGGTTGAAGTTGAGGCAATTGGACATGTCAGGCATAAGAATCTTGTCCGCCTTCTTGGATATTGCGTGGAGGGAATACACAGgtgaagctaat-ttctgatcaattgcactgacagatggatagatt--ttctcttagttcagcttccatatgtatgtacctgattgttgttgatacatacataa

upper sequence: PP1S568_2V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: AT1G01540.1 (Arabidopsis thaliana), 5'ss of exon 2
AGGCCGAGAAAGAGTTCAGAGTGGAAGTGGAAGCAATTGGACGCGTCCGGCATAAGAATCTGGTGCGGCTTCTAGGGTATTGCGCGGAAGGTGCTCACAGgtgaagcatttattcttcccacctggagtttttgtgtgccagcacaattctcttacacgtgcaatgctaacttcgtctctcgtggcttttgtag
| || ||||| || |||| ||| ||||||||||  ||||| || || || || |||||||| ||  ||||| |||||||||||| |||||||||  ||||||  |        |  ||  | ||    ||||   |||  |  | |    | |         ||||||   |||||  ||  | |         
AAGCAGAGAAGGAATTCAAAGTAGAAGTGGAAGTCATTGGGCGAGTACGACACAAGAATCTTGTTAGGCTTTTAGGGTATTGCGTGGAAGGTGCATACAGgtatatataccgctgctcgtatctc---ttttccggtgttacaaaagcgatgtcgtg-acctaatgctgggttcgttact-atag---------

upper sequence: PP1S568_2V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: EFJ31013 (Selaginella moellendorffii), 5'ss of exon 2
AGGCCGAGAAAGAGTTCAGAGTGGAAGTGGAAGCAATTGGACGCGTCCGGCATAAGAATCTGGTGCGGCTTCTAGGGTATTGCGCGGAAGGTGCTCACAGgtgaag-catttattcttcccacctggagtttttgtgtgccagcacaattctcttacacgtgcaatgctaacttcgtctctcgtggcttttgtag
|||||||||||||||| || |||||||||||||| ||||||   || || || |||||||||||  || | || || || ||||| ||  |     | |||||| |   | ||   ||||  || |   ||  | |    |  | | ||| |   |                                       
AGGCCGAGAAAGAGTTTAGGGTGGAAGTGGAAGCGATTGGAAAGGTGCGTCACAAGAATCTGGTCAGGTTGCTTGGCTACTGCGCCGAGAGCTGCTATAGgtgaggatctctaaagttccagcccgattttaatcttgttcttcgcgattgtaccag--------------------------------------

upper sequence: PP1S568_2V6.1 (Physcomitrella patens), 5'ss of exon 3
lower sequence: EFJ34699 (Selaginella moellendorffii), 5'ss of exon 2
AGGCCGAGAAAGAGTTCAGAGTGGAAGTGGAAGCAATTGGACGCGTCCGGCATAAGAATCTGGTGCGGCTTCTAGGGTATTGCGCGGAAGGTGCTCACAGgtgaag-catttattcttcccacctggagtttttgtgtgccagcacaattctcttacacgtgcaatgctaacttcgtctctcgtggcttttgtag
|||||||||||||||| || |||||||||||||| ||||||   || || || |||||||||||  || | || || || ||||| ||  |     | |||||| |   ||||    |||  || |   ||  | |    |  | | ||| |   |                                       
AGGCCGAGAAAGAGTTTAGGGTGGAAGTGGAAGCGATTGGAAAGGTGCGTCACAAGAATCTGGTCAGGTTGCTTGGCTACTGCGCCGAGAGCTGCTATAGgtgaggatctttaaaggtccagcccgattttaatcttgttcttcgcgattgtacaag--------------------------------------