Skip to another splice site:
1  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttagagcagtgtgctcatctcattgtcccggatggtgttgctgctgttatatggttgtgggctcgcgctgagattgaatgcatttcgatgatgtttgcagGACAAGGCTCAGAATGCCATAGACGATGCCAGGAACTCGCTGCAGAAGAATGCAGAGAAGGCGAAGAGCAACGCTCAGGACGCGGGGAAGGATTTGCAGG

Basic information

species Physcomitrella patens
transcript PP1S55_66V6.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162260428|gb|FC435054.1|FC435054
EST:     GCGCTAGGAATGCGAGCAAGGACGCGAGAAGCGAAGCTGAGAAGCTTGGT                         GACAAGGCTCAGAATGCCATAGACGATGCCAGGAACTCGCTGCAGAAGAAT
genomic: GCGCTAGGAATGCGAGCAAGGACGCGAGAAGCGAAGCTGAGAAGCTTGGTgtaagttttc ... atgtttgcagGACAAGGCTCAGAATGCCATAGACGATGCCAGGAACTCGCTGCAGAAGAAT
EST: gi|162269077|gb|FC444945.1|FC444945
EST:     GCGCTAGGAATGCGAGCAAGGACGCGAGAAGCGAAGCTGAGAAGCTTGGT                         GACAAGGCTCAGAATGCCATAGACGATGCCAGGAACTCGCTGCAGAAGAAT
genomic: GCGCTAGGAATGCGAGCAAGGACGCGAGAAGCGAAGCTGAGAAGCTTGGTgtaagttttc ... atgtttgcagGACAAGGCTCAGAATGCCATAGACGATGCCAGGAACTCGCTGCAGAAGAAT
EST: gi|208349061|gb|DC921707.1|DC921707
EST:     GCGCTAGGAATGCGAGCAAGGACGCGAGAAGCGAAGCTGAGAAGCTTGGT                         GACAAGGCTCAGAATGCCATAGACGATGCCAGGAACTCGCTGCAGAAGAAT
genomic: GCGCTAGGAATGCGAGCAAGGACGCGAGAAGCGAAGCTGAGAAGCTTGGTgtaagttttc ... atgtttgcagGACAAGGCTCAGAATGCCATAGACGATGCCAGGAACTCGCTGCAGAAGAAT
EST: gi|162271798|gb|FC448931.1|FC448931
EST:     GCGCTAGGAATGCGAGCAAGGACGCGAGAAGCGAAGCTGAGAAGCTTGGT                         GACAAGGCTCAGAATGCCATAGACGATGCCAGGAACTCGCTGCAGAAGAAT
genomic: GCGCTAGGAATGCGAGCAAGGACGCGAGAAGCGAAGCTGAGAAGCTTGGTgtaagttttc ... atgtttgcagGACAAGGCTCAGAATGCCATAGACGATGCCAGGAACTCGCTGCAGAAGAAT
EST: gi|162261748|gb|FC437037.1|FC437037
EST:     GCGCTAGGAATGCGAGCAAGGACGCGAGAAGCGAAGCTGAGAAGCTTGGT                         GACAAGGCTCAGAATGCCATAGACGATGCCAGGAACTCGCTGCAGAAGAAT
genomic: GCGCTAGGAATGCGAGCAAGGACGCGAGAAGCGAAGCTGAGAAGCTTGGTgtaagttttc ... atgtttgcagGACAAGGCTCAGAATGCCATAGACGATGCCAGGAACTCGCTGCAGAAGAAT
EST: gi|67578756|gb|BJ950923.1|BJ950923
EST:     GCGCTAGGAATGCGAGCAAGGACGCGAGAAGCGAAGCTGAGAAGCTTGGT                         GACAAGGCTCAGAATGCCATAGACGATGCCAGGAACTCGCTGCAGAAGAAT
genomic: GCGCTAGGAATGCGAGCAAGGACGCGAGAAGCGAAGCTGAGAAGCTTGGTgtaagttttc ... atgtttgcagGACAAGGCTCAGAATGCCATAGACGATGCCAGGAACTCGCTGCAGAAGAAT
EST: gi|162263722|gb|FC438906.1|FC438906
EST:     GCGCTAGGAATGCGAGCAAGGACGCGAGAAGCGAAGCTGAGAAGCTTGGT                         GACAAGGCTCAGAATGCCATAGACGATGCCGGGAACTCGCTGCAGAAGAAT
genomic: GCGCTAGGAATGCGAGCAAGGACGCGAGAAGCGAAGCTGAGAAGCTTGGTgtaagttttc ... atgtttgcagGACAAGGCTCAGAATGCCATAGACGATGCCAGGAACTCGCTGCAGAAGAAT
EST: gi|67701310|gb|BJ961543.1|BJ961543
EST:     GCGCTAGGAATGCGAGCAAGGACGCGAGAAGCGAAGCTGAGAAGCTTGGT                         GACAAGGCTCAGAATGCCATAGACGATGCCAGGAACTCGCTGCAGAAGAAT
genomic: GCGCTAGGAATGCGAGCAAGGACGCGAGAAGCGAAGCTGAGAAGCTTGGTgtaagttttc ... atgtttgcagGACAAGGCTCAGAATGCCATAGACGATGCCAGGAACTCGCTGCAGAAGAAT
EST: gi|162267775|gb|FC443765.1|FC443765
EST:     GCGCTAGGAATGCGAGCAAGGACGCGAGAAGCGAAGCTGAGAAGCTTGGT                         GACAAGGCTCAGAATGCCATAGACGATGCCAGGAACTCGCTGCAGAAGAAT
genomic: GCGCTAGGAATGCGAGCAAGGACGCGAGAAGCGAAGCTGAGAAGCTTGGTgtaagttttc ... atgtttgcagGACAAGGCTCAGAATGCCATAGACGATGCCAGGAACTCGCTGCAGAAGAAT
EST: gi|162265198|gb|FC441285.1|FC441285
EST:     GCGCTAGGAATGCGAGCAAGGACGCGAGAAGCGAAGCTGAGAAGCTTGGT                         GACAAGGCTCAGAATGCCATAGACGATGCCAGGAACTCGCTGCAGAAGAAT
genomic: GCGCTAGGAATGCGAGCAAGGACGCGAGAAGCGAAGCTGAGAAGCTTGGTgtaagttttc ... atgtttgcagGACAAGGCTCAGAATGCCATAGACGATGCCAGGAACTCGCTGCAGAAGAAT
EST: gi|162255840|gb|FC431916.1|FC431916
EST:     GCGCTAGGAATGCGAGCAAGGACGCGAGAAGCGAAGCTGAGAAGCTTGGT                         GACAAGGCTCAGAATGCCATAGACGATGCCGGGAACTCGCTGCAGAAGAAT
genomic: GCGCTAGGAATGCGAGCAAGGACGCGAGAAGCGAAGCTGAGAAGCTTGGTgtaagttttc ... atgtttgcagGACAAGGCTCAGAATGCCATAGACGATGCCAGGAACTCGCTGCAGAAGAAT
EST: gi|162279861|gb|FC455145.1|FC455145
EST:     GCGCTAGGAATGCGAGCAAGGACGCGAGAAGCGAAGCTGAGAAGCTTGGT                         GACAAGGCTCAGAATGCCATAGACGATGCCGGGAACTCGCTGCAGAAGAAT
genomic: GCGCTAGGAATGCGAGCAAGGACGCGAGAAGCGAAGCTGAGAAGCTTGGTgtaagttttc ... atgtttgcagGACAAGGCTCAGAATGCCATAGACGATGCCAGGAACTCGCTGCAGAAGAAT
EST: gi|162266018|gb|FC442703.1|FC442703
EST:     GCGCTAGGAATGCGAGCAAGGACGCGAGAAGCGAAGCTGAGAAGCTTGGT                         GACAAGGCTCAGAATGCCATAGACGATGCCAGGAACTCGCTGCAGAAGAAT
genomic: GCGCTAGGAATGCGAGCAAGGACGCGAGAAGCGAAGCTGAGAAGCTTGGTgtaagttttc ... atgtttgcagGACAAGGCTCAGAATGCCATAGACGATGCCAGGAACTCGCTGCAGAAGAAT
EST: gi|162262838|gb|FC438750.1|FC438750
EST:     GCGCTAGGAATGCGAGCAAGGACGCGAGAAGCGAAGCTGAGAAGCTTGGT                         GACAAGGCTCAGAATGCCATAGACGATGCCGGGAACTCGCTGCAGAAGAAT
genomic: GCGCTAGGAATGCGAGCAAGGACGCGAGAAGCGAAGCTGAGAAGCTTGGTgtaagttttc ... atgtttgcagGACAAGGCTCAGAATGCCATAGACGATGCCAGGAACTCGCTGCAGAAGAAT
EST: gi|67700558|gb|BJ960791.1|BJ960791
EST:     GCGCTAGGAATGCGAGCAAGGACGCGAGAAGCGAAGCTGAGAAGCTTGGT                         GACAAGGCTCAGAATGCCATAGACGATGCCAGGAACTCGCTGCAGAAGAAT
genomic: GCGCTAGGAATGCGAGCAAGGACGCGAGAAGCGAAGCTGAGAAGCTTGGTgtaagttttc ... atgtttgcagGACAAGGCTCAGAATGCCATAGACGATGCCAGGAACTCGCTGCAGAAGAAT
EST: gi|162270481|gb|FC447589.1|FC447589
EST:     GCGCTAGGAATGCGAGCAAGGACGCGAGAAGCGAAGCTGAGAAGCTTGGT                         GACAAGGCTCAGAATGCCATAGACGATGCCGGGAACTCGCTGCAGAAGAAT
genomic: GCGCTAGGAATGCGAGCAAGGACGCGAGAAGCGAAGCTGAGAAGCTTGGTgtaagttttc ... atgtttgcagGACAAGGCTCAGAATGCCATAGACGATGCCAGGAACTCGCTGCAGAAGAAT
EST: gi|67570208|gb|BJ943032.1|BJ943032
EST:     GCGCTAGGAATGCGAGCAAGGACGCGAGAAGCGAAGCTGAGAAGCTTGGT                         GACAAGGCTCAGAATGCCATAGACGATGCCAGGAACTCGCTGCAGAAGAAT
genomic: GCGCTAGGAATGCGAGCAAGGACGCGAGAAGCGAAGCTGAGAAGCTTGGTgtaagttttc ... atgtttgcagGACAAGGCTCAGAATGCCATAGACGATGCCAGGAACTCGCTGCAGAAGAAT
EST: gi|67692714|gb|BJ952947.1|BJ952947
EST:     GCGCTAGGAATGCGAGCAAGGACGCGAGAAGCGAAGCTGAGAAGCTTGGT                         GACAAGGCTCAGAATGCCATAGACGATGCCAGGAACTCGCTGCAGAAGAAT
genomic: GCGCTAGGAATGCGAGCAAGGACGCGAGAAGCGAAGCTGAGAAGCTTGGTgtaagttttc ... atgtttgcagGACAAGGCTCAGAATGCCATAGACGATGCCAGGAACTCGCTGCAGAAGAAT
EST: gi|162261193|gb|FC437210.1|FC437210
EST:     GCGCTAGGAATGCGAGCAAGGACGCGAGAAGCGAAGCTGAGAAGCTTGGT                         GACAAGGCTCAGAATGCCATAGACGATGCCAGGAACTCGCTGCAGAAGAAT
genomic: GCGCTAGGAATGCGAGCAAGGACGCGAGAAGCGAAGCTGAGAAGCTTGGTgtaagttttc ... atgtttgcagGACAAGGCTCAGAATGCCATAGACGATGCCAGGAACTCGCTGCAGAAGAAT
EST: gi|18341583|gb|BJ173618.1|BJ173618
EST:     GCGCTAGGAATGCGAGCAAGGACGCGAGAAGCGAAGCTGAGAAGCTTGGT                         GACAAGGCTCAGAATGCCATAGACGATGCCAGGAACTCGCTGCAGAAGAAT
genomic: GCGCTAGGAATGCGAGCAAGGACGCGAGAAGCGAAGCTGAGAAGCTTGGTgtaagttttc ... atgtttgcagGACAAGGCTCAGAATGCCATAGACGATGCCAGGAACTCGCTGCAGAAGAAT
EST: gi|162259344|gb|FC436222.1|FC436222
EST:     GCGCTAGGAATGCGAGCAAGGACGCGAGAAGCGAAGCTGAGAAGCTTGGT                         GACAAGGCTCAGAATGCCATAGACGATGCCGGGAACTCGCTGCAGAAGAAT
genomic: GCGCTAGGAATGCGAGCAAGGACGCGAGAAGCGAAGCTGAGAAGCTTGGTgtaagttttc ... atgtttgcagGACAAGGCTCAGAATGCCATAGACGATGCCAGGAACTCGCTGCAGAAGAAT
EST: gi|208348246|gb|DC916945.1|DC916945
EST:     GCGCTAGGAATGCGAGCAAGGACGCGAGAAGCGAAGCTGAGAAGCTTGGT                         GACAAGGCTCAGAATGCCATAGACGATGCCAGGAACTCGCTGCAGAAGAAT
genomic: GCGCTAGGAATGCGAGCAAGGACGCGAGAAGCGAAGCTGAGAAGCTTGGTgtaagttttc ... atgtttgcagGACAAGGCTCAGAATGCCATAGACGATGCCAGGAACTCGCTGCAGAAGAAT
EST: gi|162262183|gb|FC437926.1|FC437926
EST:     GCGCTAGGAATGCGAGCAAGGACGCGAGAAGCGAAGCTGAGAAGCTTGGT                         GACAAGGCTCAGAATGCCATAGACGATGCCAGGAACTCGCTGCAGAAGAAT
genomic: GCGCTAGGAATGCGAGCAAGGACGCGAGAAGCGAAGCTGAGAAGCTTGGTgtaagttttc ... atgtttgcagGACAAGGCTCAGAATGCCATAGACGATGCCAGGAACTCGCTGCAGAAGAAT
EST: gi|67696788|gb|BJ957021.1|BJ957021
EST:     GCGCTAGGAATGCGAGCAAGGACGCGAGAAGCGAAGCTGAGAAGCTTGGT                         GACAAGGCTCAGAATGCCATAGACGATGCCAGGAACTCGCTGCAGAAGAAT
genomic: GCGCTAGGAATGCGAGCAAGGACGCGAGAAGCGAAGCTGAGAAGCTTGGTgtaagttttc ... atgtttgcagGACAAGGCTCAGAATGCCATAGACGATGCCAGGAACTCGCTGCAGAAGAAT
EST: gi|162269078|gb|FC444946.1|FC444946
EST:     GCGCTAGGAATGCGAGCAAGGACGCGAGAAGCGAAGCTGAGAAGCTTGGT                         GACAAGGCTCAGAATGCCATAGACGATGCCAGGAACTCGCTGCAGAAGAAT
genomic: GCGCTAGGAATGCGAGCAAGGACGCGAGAAGCGAAGCTGAGAAGCTTGGTgtaagttttc ... atgtttgcagGACAAGGCTCAGAATGCCATAGACGATGCCAGGAACTCGCTGCAGAAGAAT
EST: gi|208357382|gb|DC910723.1|DC910723
EST:     GCGCTAGGAATGCGAGCAAGGACGCGAGAAGCGAAGCTGAGAAGCTTGGT                         GACAAGGCTCAGAATGCCATAGACGATGCCGGGAACTCGCTGCAGAAGAAT
genomic: GCGCTAGGAATGCGAGCAAGGACGCGAGAAGCGAAGCTGAGAAGCTTGGTgtaagttttc ... atgtttgcagGACAAGGCTCAGAATGCCATAGACGATGCCAGGAACTCGCTGCAGAAGAAT
EST: gi|162267141|gb|FC443372.1|FC443372
EST:     GCGCTAGGAATGCGAGCAAGGACGCGAGAAGCGAAGCTGAGAAGCTTGGT                         GACAAGGCTCAGAATGCCATAGACGATGCCAGGAACTCGCTGCAGAAGAAT
genomic: GCGCTAGGAATGCGAGCAAGGACGCGAGAAGCGAAGCTGAGAAGCTTGGTgtaagttttc ... atgtttgcagGACAAGGCTCAGAATGCCATAGACGATGCCAGGAACTCGCTGCAGAAGAAT
EST: gi|67695990|gb|BJ956223.1|BJ956223
EST:     GCGCTAGGAATGCGAGCAAGGACGCGAGAAGCGAAGCTGAGAAGCTTGGT                         GACAAGGCTCAGAATGCCATAGACGATGCCAGGAACTCGCTGCAGAAGAAT
genomic: GCGCTAGGAATGCGAGCAAGGACGCGAGAAGCGAAGCTGAGAAGCTTGGTgtaagttttc ... atgtttgcagGACAAGGCTCAGAATGCCATAGACGATGCCAGGAACTCGCTGCAGAAGAAT
EST: gi|208389509|gb|DC929434.1|DC929434
EST:     GCGCTAGGAATGCGAGCAAGGACGCGAGAAGCGAAGCTGAGAAGCTTGGT                         GACAAGGCTCAGAATGCCATAGACGATGCCGGGAACTCGCTGCAGAAGAAT
genomic: GCGCTAGGAATGCGAGCAAGGACGCGAGAAGCGAAGCTGAGAAGCTTGGTgtaagttttc ... atgtttgcagGACAAGGCTCAGAATGCCATAGACGATGCCAGGAACTCGCTGCAGAAGAAT
EST: gi|67693476|gb|BJ953709.1|BJ953709
EST:     GCGCTAGGAATGCGAGCAAGGACGCGAGAAGCGAAGCTGAGAAGCTTGGT                         GACAAGGCTCAGAATGCCATAGACGATGCCAGGAACTCGCTGCAGAAGAAT
genomic: GCGCTAGGAATGCGAGCAAGGACGCGAGAAGCGAAGCTGAGAAGCTTGGTgtaagttttc ... atgtttgcagGACAAGGCTCAGAATGCCATAGACGATGCCAGGAACTCGCTGCAGAAGAAT
EST: gi|67572618|gb|BJ945442.1|BJ945442
EST:     GCGCTAGGAATGCGAGCAAGGACGCGAGAAGCGAAGCTGAGAAGCTTGGT                         GACAAGGCTCAGAATGCCATAGACGATGCCAGGAACTCGCTGCAGAAGAAT
genomic: GCGCTAGGAATGCGAGCAAGGACGCGAGAAGCGAAGCTGAGAAGCTTGGTgtaagttttc ... atgtttgcagGACAAGGCTCAGAATGCCATAGACGATGCCAGGAACTCGCTGCAGAAGAAT
EST: gi|67697700|gb|BJ957933.1|BJ957933
EST:     GCGCTAGGAATGCGAGCAAGGACGCGAGAAGCGAAGCTGAGAAGCTTGGT                         GACAAGGCTCAGAATGCCATAGACGATGCCAGGAACTCGCTGCAGAAGAAT
genomic: GCGCTAGGAATGCGAGCAAGGACGCGAGAAGCGAAGCTGAGAAGCTTGGTgtaagttttc ... atgtttgcagGACAAGGCTCAGAATGCCATAGACGATGCCAGGAACTCGCTGCAGAAGAAT
EST: gi|162266216|gb|FC441940.1|FC441940
EST:     GCGCTAGGAATGCGAGCAAGGACGCGAGAAGCGAAGCTGAGAAGCTTGGT                         GACAAGGCTCAGAATGCCATAGACGATGCCAGGAACTCGCTGCAGAAGAAT
genomic: GCGCTAGGAATGCGAGCAAGGACGCGAGAAGCGAAGCTGAGAAGCTTGGTgtaagttttc ... atgtttgcagGACAAGGCTCAGAATGCCATAGACGATGCCAGGAACTCGCTGCAGAAGAAT
EST: gi|162276923|gb|FC453021.1|FC453021
EST:     GCGCTAGGAATGCGAGCAAGGACGCGAGAAGCGAAGCTGAGAAGCTTGGT                         GACAAGGCTCAGAATGCCATAGACGATGCCGGGAACTCGCTGCAGAAGAAT
genomic: GCGCTAGGAATGCGAGCAAGGACGCGAGAAGCGAAGCTGAGAAGCTTGGTgtaagttttc ... atgtttgcagGACAAGGCTCAGAATGCCATAGACGATGCCAGGAACTCGCTGCAGAAGAAT
EST: gi|162275099|gb|FC451686.1|FC451686
EST:     GCGCTAGGAATGCGAGCAAGGACGCGAGAAGCGAAGCTGAGAAGCTTGGT                         GACAAGGCTCAGAATGCCATAGACGATGCCAGGAACTCGCTGCAGAAGAAT
genomic: GCGCTAGGAATGCGAGCAAGGACGCGAGAAGCGAAGCTGAGAAGCTTGGTgtaagttttc ... atgtttgcagGACAAGGCTCAGAATGCCATAGACGATGCCAGGAACTCGCTGCAGAAGAAT
EST: gi|162270905|gb|FC447649.1|FC447649
EST:     GCGCTAGGAATGCGAGCAAGGACGCGAGAAGCGAAGCTGAGAAGCTTGGT                         GACAAGGCTCAGAATGCCATAGACGATGCCAGGAACTCGCTGCAGAAGAAT
genomic: GCGCTAGGAATGCGAGCAAGGACGCGAGAAGCGAAGCTGAGAAGCTTGGTgtaagttttc ... atgtttgcagGACAAGGCTCAGAATGCCATAGACGATGCCAGGAACTCGCTGCAGAAGAAT
EST: gi|162272213|gb|FC448722.1|FC448722
EST:     GCGCTAGGAATGCGAGCAAGGACGCGAGAAGCGAAGCTGAGAAGCTTGGT                         GACAAGGCTCAGAATGCCATAGACGATGCCAGGAACTCGCTGCAGAAGAAT
genomic: GCGCTAGGAATGCGAGCAAGGACGCGAGAAGCGAAGCTGAGAAGCTTGGTgtaagttttc ... atgtttgcagGACAAGGCTCAGAATGCCATAGACGATGCCAGGAACTCGCTGCAGAAGAAT
EST: gi|162268253|gb|FC444542.1|FC444542
EST:     GCGCTAGGAATGCGAGCAAGGACGCGAGAAGCGAAGCTGAGAAGCTTGGT                         GACAAGGCTCAGAATGCCATAGACGATGCCAGGAACTCGCTGCAGAAGAAT
genomic: GCGCTAGGAATGCGAGCAAGGACGCGAGAAGCGAAGCTGAGAAGCTTGGTgtaagttttc ... atgtttgcagGACAAGGCTCAGAATGCCATAGACGATGCCAGGAACTCGCTGCAGAAGAAT
EST: gi|67574710|gb|BJ947534.1|BJ947534
EST:     GCGCTAGGAATGCGAGCAAGGACGCGAGAAGCGAAGCTGAGAAGCTTGGT                         GACAAGGCTCAGAATGCCATAGACGATGCCGGGAACTCGCTGCA
genomic: GCGCTAGGAATGCGAGCAAGGACGCGAGAAGCGAAGCTGAGAAGCTTGGTgtaagttttc ... atgtttgcagGACAAGGCTCAGAATGCCATAGACGATGCCAGGAACTCGCTGCA
EST: gi|208400848|gb|DC925128.1|DC925128
EST:     GCGCTAGGAATGCGAGCAAGGACGCGAGAAGCGAAGCTGAGAAGNTTNGT                         GACAAGGCTCAGAATGCCATAGACGATGCCAGGAACTCGCTGCAGAAGAAT
genomic: GCGCTAGGAATGCGAGCAAGGACGCGAGAAGCGAAGCTGAGAAGCTTGGTgtaagttttc ... atgtttgcagGACAAGGCTCAGAATGCCATAGACGATGCCAGGAACTCGCTGCAGAAGAAT
EST: gi|162261285|gb|FC437302.1|FC437302
EST:     GCGCTAGGAATGCGAGCAAGGACGCGAGAAGCGAAGCTGAGAAGCTTGGT                         GACAAGGCTCAGAATGCCATAGACGATGCCGGGAACTCGCTGCAGAAGAAT
genomic: GCGCTAGGAATGCGAGCAAGGACGCGAGAAGCGAAGCTGAGAAGCTTGGTgtaagttttc ... atgtttgcagGACAAGGCTCAGAATGCCATAGACGATGCCAGGAACTCGCTGCAGAAGAAT
EST: gi|162268461|gb|FC444334.1|FC444334
EST:     GCGCTAGGAATGCGAGCAAGGACGCGAGAAGCGAAGCTGAGAAGCTTGGT                         GACAAGGCTCAGAATGCCATAGACGATGCCAGGAACTCGCTGCAGAAGAAT
genomic: GCGCTAGGAATGCGAGCAAGGACGCGAGAAGCGAAGCTGAGAAGCTTGGTgtaagttttc ... atgtttgcagGACAAGGCTCAGAATGCCATAGACGATGCCAGGAACTCGCTGCAGAAGAAT
EST: gi|67699632|gb|BJ959865.1|BJ959865
EST:     GCGCTAGGAATGCGAGCAAGGACGCGAGAAGCGAAGCTGAGAAGCTTGGT                         GACAAGGCTCAGAATGCCATAGACGATGCCAGGAACTCGCTGCAGAAGAAT
genomic: GCGCTAGGAATGCGAGCAAGGACGCGAGAAGCGAAGCTGAGAAGCTTGGTgtaagttttc ... atgtttgcagGACAAGGCTCAGAATGCCATAGACGATGCCAGGAACTCGCTGCAGAAGAAT
EST: gi|162260890|gb|FC437947.1|FC437947
EST:     GCGCTAGGAATGCGAGCAAGGACGCGAGAAGCGAAGCTGAGAAGCTTGGT                         GACAAGGCTCAGAATGCCATAGACGATGCCAGGAACTCGCTGCAGAAGAAT
genomic: GCGCTAGGAATGCGAGCAAGGACGCGAGAAGCGAAGCTGAGAAGCTTGGTgtaagttttc ... atgtttgcagGACAAGGCTCAGAATGCCATAGACGATGCCAGGAACTCGCTGCAGAAGAAT
EST: gi|162273964|gb|FC450103.1|FC450103
EST:     GCGCTAGGAATGCGAGCAAGGACGCGAGAAGCGAAGCTGAGAAGCTTGGT                         GACAAGGCTCAGAATGCCATAGACGATGCCAGGAACTCGCTGCAGAAGAAT
genomic: GCGCTAGGAATGCGAGCAAGGACGCGAGAAGCGAAGCTGAGAAGCTTGGTgtaagttttc ... atgtttgcagGACAAGGCTCAGAATGCCATAGACGATGCCAGGAACTCGCTGCAGAAGAAT
EST: gi|162265314|gb|FC440432.1|FC440432
EST:     GCGCTAGGAATGCGAGCAAGGACGCGAGAAGCGAAGCTGAGAAGCTTGGT                         GACAAGGCTCAGAATGCCATAGACGATGCCGGGAACTCGCTGCAGAAGAAT
genomic: GCGCTAGGAATGCGAGCAAGGACGCGAGAAGCGAAGCTGAGAAGCTTGGTgtaagttttc ... atgtttgcagGACAAGGCTCAGAATGCCATAGACGATGCCAGGAACTCGCTGCAGAAGAAT
EST: gi|18336276|gb|BJ168298.1|BJ168298
EST:     GCGCTAGGAATGCGAGCAAGGACGCGAGAAGCGAAGCTGAGAAGCTTGGT                         GACAAGGCTCAGAATGCCATAGACGATGCCAGGAACTCGCTGCAGAAGAAT
genomic: GCGCTAGGAATGCGAGCAAGGACGCGAGAAGCGAAGCTGAGAAGCTTGGTgtaagttttc ... atgtttgcagGACAAGGCTCAGAATGCCATAGACGATGCCAGGAACTCGCTGCAGAAGAAT
EST: gi|162275317|gb|FC451501.1|FC451501
EST:     GCGCTAGGAATGCGAGCAAGGACGCGAGAAGCGAAGCTGAGAAGCTTGGT                         GACAAGGCTCAGAATGCCATAGACGATGCCGGGAACTCGCTGCAGAAGAAT
genomic: GCGCTAGGAATGCGAGCAAGGACGCGAGAAGCGAAGCTGAGAAGCTTGGTgtaagttttc ... atgtttgcagGACAAGGCTCAGAATGCCATAGACGATGCCAGGAACTCGCTGCAGAAGAAT
EST: gi|162277427|gb|FC452954.1|FC452954
EST:     GCGCTAGGAATGCGAGCAAGGACGCGAGAAGCGAAGCTGAGAAGCTTGGT                         GACAAGGCTCAGAATGCCATAGACGATGCCAGGAACTCGCTGCAGAAGAAT
genomic: GCGCTAGGAATGCGAGCAAGGACGCGAGAAGCGAAGCTGAGAAGCTTGGTgtaagttttc ... atgtttgcagGACAAGGCTCAGAATGCCATAGACGATGCCAGGAACTCGCTGCAGAAGAAT
EST: gi|208395502|gb|DC928917.1|DC928917
EST:     GCGCTAGGAATGCGAGCAAGGACGCGAGAAGCGAAGCTGAGAAGCTTGGT                         GACAAGGCTCAGAATGCCATAGACGATGCCAGGAACTCGCTGCAGAAGAAT
genomic: GCGCTAGGAATGCGAGCAAGGACGCGAGAAGCGAAGCTGAGAAGCTTGGTgtaagttttc ... atgtttgcagGACAAGGCTCAGAATGCCATAGACGATGCCAGGAACTCGCTGCAGAAGAAT
EST: gi|162272212|gb|FC448721.1|FC448721
EST:     GCGCTAGGAATGCGAGCAAGGACGCGAGAAGCGAAGCTGAGAAGCTTGGT                         GACAAGGCTCAGAATGCCATAGACGATGCCAGGAACTCGCTGCAGAAGAAT
genomic: GCGCTAGGAATGCGAGCAAGGACGCGAGAAGCGAAGCTGAGAAGCTTGGTgtaagttttc ... atgtttgcagGACAAGGCTCAGAATGCCATAGACGATGCCAGGAACTCGCTGCAGAAGAAT
EST: gi|162261192|gb|FC437209.1|FC437209
EST:     GCGCTAGGAATGCGAGCAAGGACGCGAGAAGCGAAGCTGAGAAGCTTGGT                         GACAAGGCTCAGAATGCCATAGACGATGCCAGGAACTCGCTGCAGAAGAAT
genomic: GCGCTAGGAATGCGAGCAAGGACGCGAGAAGCGAAGCTGAGAAGCTTGGTgtaagttttc ... atgtttgcagGACAAGGCTCAGAATGCCATAGACGATGCCAGGAACTCGCTGCAGAAGAAT
EST: gi|162265199|gb|FC441286.1|FC441286
EST:     GCGCTAGGAATGCGAGCAAGGACGCGAGAAGCGAAGCTGAGAAGCTTGGT                         GACAAGGCTCAGAATGCCATAGACGATGCCAGGAACTCGCTGCAGAAGAAT
genomic: GCGCTAGGAATGCGAGCAAGGACGCGAGAAGCGAAGCTGAGAAGCTTGGTgtaagttttc ... atgtttgcagGACAAGGCTCAGAATGCCATAGACGATGCCAGGAACTCGCTGCAGAAGAAT
EST: gi|208348110|gb|DC916920.1|DC916920
EST:     GCGCTAGGAATGCGAGCAAGGACGCGAGAAGCGAAGCTGAGAAGCTTGGT                         GACAAGGCTCAGAATGCCATAGACGATGCCAGGAACTCGCTGCAGAAGAAT
genomic: GCGCTAGGAATGCGAGCAAGGACGCGAGAAGCGAAGCTGAGAAGCTTGGTgtaagttttc ... atgtttgcagGACAAGGCTCAGAATGCCATAGACGATGCCAGGAACTCGCTGCAGAAGAAT
EST: gi|162262673|gb|FC438468.1|FC438468
EST:     GCGCTAGGAATGCGAGCAAGGACGCGAGAAGCGAAGCTGAGAAGCTTGGT                         GACAAGGCTCAGAATGCCATAGACGATGCCGGGAACTCGCTGCAGAAGAAT
genomic: GCGCTAGGAATGCGAGCAAGGACGCGAGAAGCGAAGCTGAGAAGCTTGGTgtaagttttc ... atgtttgcagGACAAGGCTCAGAATGCCATAGACGATGCCAGGAACTCGCTGCAGAAGAAT
EST: gi|162262115|gb|FC436870.1|FC436870
EST:     GCGCTAGGAATGCGAGCAAGGACGCGAGAAGCGAAGCTGAGAAGCTTGGT                         GACAAGGCTCAGAATGCCATAGACGATGCCAGGAACTCGCTGCAGAAGAAT
genomic: GCGCTAGGAATGCGAGCAAGGACGCGAGAAGCGAAGCTGAGAAGCTTGGTgtaagttttc ... atgtttgcagGACAAGGCTCAGAATGCCATAGACGATGCCAGGAACTCGCTGCAGAAGAAT
EST: gi|18341763|gb|BJ173798.1|BJ173798
EST:     GCGCTAGGAATGCGAGCAAGGACGCGAGAAGCGAAGCTGAGAAGCTTGGT                         GACAAGGCTCAGAATGCCATAGACGATGCCAGGAACTCGCTGCAGAAGAAT
genomic: GCGCTAGGAATGCGAGCAAGGACGCGAGAAGCGAAGCTGAGAAGCTTGGTgtaagttttc ... atgtttgcagGACAAGGCTCAGAATGCCATAGACGATGCCAGGAACTCGCTGCAGAAGAAT
EST: gi|162262563|gb|FC439749.1|FC439749
EST:     GCGCTAGGAATGCGAGCAAGGACGCGAGAAGCGAAGCTGAGAAGCTTGGT                         GACAAGGCTCAGAATGCCATAGACGATGCCGGGAACTCGCTGCAGAAGAAT
genomic: GCGCTAGGAATGCGAGCAAGGACGCGAGAAGCGAAGCTGAGAAGCTTGGTgtaagttttc ... atgtttgcagGACAAGGCTCAGAATGCCATAGACGATGCCAGGAACTCGCTGCAGAAGAAT
EST: gi|162262114|gb|FC436869.1|FC436869
EST:     GCGCTAGGAATGCGAGCAAGGACGCGAGAAGCGAAGCTGAGAAGCTTGGT                         GACAAGGCTCAGAATGCCATAGACGATGCCAGGAACTCGCTGCAGAAGAAT
genomic: GCGCTAGGAATGCGAGCAAGGACGCGAGAAGCGAAGCTGAGAAGCTTGGTgtaagttttc ... atgtttgcagGACAAGGCTCAGAATGCCATAGACGATGCCAGGAACTCGCTGCAGAAGAAT
EST: gi|162277428|gb|FC452955.1|FC452955
EST:     GCGCTAGGAATGCGAGCAAGGACGCGAGAAGCGAAGCTGAGAAGCTTGGT                         GACAAGGCTCAGAATGCCATAGACGATGCCAGGAACTCGCTGCAGAAGAAT
genomic: GCGCTAGGAATGCGAGCAAGGACGCGAGAAGCGAAGCTGAGAAGCTTGGTgtaagttttc ... atgtttgcagGACAAGGCTCAGAATGCCATAGACGATGCCAGGAACTCGCTGCAGAAGAAT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 35 (downstream exon)
Score: 705

GGAGAAGCTGGGCGACAAGGCTGACGACGCAGGCAGGGACTTGGAGGGCAGCGCTAGGAATGCGAGCAAGGACGCGAGAAGCGAAGCTGAGAAGCTTGGTgtaagttttc ... atgtttgcagGACAAGGCTCAGAATGCCATAGACGATGCCAGGAACTCGCTGCAGAAGAATGCAGAGAAGGCGAAGAGCAACGCTCAGGACGCGGGGAAGGATTTGCAGG




<











<


<











 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttatatggttgtgggctcgcgctgagattgaatgcatttcgatgatgtttgcagGACAAGGCTCAGAATGCCATAGACGATGCCAGGAACTCGCTGCAGAAGAATGCAGAGAAGGCGAAGAGCAACGCTCAGGACGCGGGGAAGGATTTGCAGG
                           attgaat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ttagagcagtgtgctcatctcattgtcccggatggtgttgctgctgttatatggttgtgggctcgcgctgagattgaatgcatttcgatgatgtttgcagGACAAGGCTCAGAATGCCATAGACGATGCCAGGAACTCGCTGCAGAAGAATGCAGAGAAGGCGAAGAGCAACGCTCAGGACGCGGGGAAGGATTTGCAGG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - tgctgct