1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
ACTTGCCATCTCGGAATACCTCTCCAGGCGATCGTGATCGCGAATCCAAGGGGCTCGTGTCGGCGCGGAAGGAATGTTTCGGATTAACTTTTGTCGCCAGgtgattgattgtttcaactttgatttttaagcatttcggttctagcgacgattgacatgattttgatgagaggtttagggggatggtggataccgagcat...
species | Physcomitrella patens |
transcript | PP1S55_63V6.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GGGCTCGTGTCGGCGCGGAAGGAATGTTTCGGATTAACTTTTGTCGCCAG CTCTAGCGAGGATGTAACGTGTAGGAAGTTGCACATGGCAACCAGGCATATEST: gi|18351377|gb|BJ183429.1|BJ183429
genomic: GGGCTCGTGTCGGCGCGGAAGGAATGTTTCGGATTAACTTTTGTCGCCAGgtgattgatt ... aaattcgcagCTCTAGCGAGGATGTAACGTGTAGGAAGTTGCACATGGCAACCAGGCATAT
EST: GGGCTCGTGTCGGCGCGGAAGGAATGTTTCGGATTAACTTTTGTCGCCAG CTCTAGCGAGGATGTAACGTGTAGGAAGTTGCACATGGCAACCAGGCATATEST: gi|18353785|gb|BJ185840.1|BJ185840
genomic: GGGCTCGTGTCGGCGCGGAAGGAATGTTTCGGATTAACTTTTGTCGCCAGgtgattgatt ... aaattcgcagCTCTAGCGAGGATGTAACGTGTAGGAAGTTGCACATGGCAACCAGGCATAT
EST: GGGCTCGTGTCGGCGCGGAAGGAATGTTTCGGATTAACTTTTGTCGCCAG CTCTAGCGAGGATGTAACGTGTAGGAAGTTGCACATGGCAACCAGGCATATEST: gi|18363032|gb|BJ195104.1|BJ195104
genomic: GGGCTCGTGTCGGCGCGGAAGGAATGTTTCGGATTAACTTTTGTCGCCAGgtgattgatt ... aaattcgcagCTCTAGCGAGGATGTAACGTGTAGGAAGTTGCACATGGCAACCAGGCATAT
EST: GGGCTCGTGTCGGCGCGGAAGGAATGTTTCGGATTAACTTTTGTCGCCAG CTCTAGCGAGGATGTAACGTGTAGGAAGTTGCACATGGCAACCAGGCATAT
genomic: GGGCTCGTGTCGGCGCGGAAGGAATGTTTCGGATTAACTTTTGTCGCCAGgtgattgatt ... aaattcgcagCTCTAGCGAGGATGTAACGTGTAGGAAGTTGCACATGGCAACCAGGCATAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACTTGCCATCTCGGAATACCTCTCCAGGCGATCGTGATCGCGAATCCAAGGGGCTCGTGTCGGCGCGGAAGGAATGTTTCGGATTAACTTTTGTCGCCAGgtgattgattgtttcaactttgatttttaagcatttcggttctagcgacgattgacatgattttgatgagaggtttagggggatggtggataccgagcat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA