Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|162277636|gb|FC453267.1|FC453267EST: TCGTGAAGATTCGTAATGAAGCTGGAATGTTTTTGATTGAGTCTAGTCAG GAAATGGATGATGGGCGAATGAAGTCTAGGAATAGGCCACTATCTGAAAAA
genomic: TCGTGAAGATTCGTAATGAAGCTGGAATGTTTTTGATTGAGTCTAGTCAGgtatcatact ... cttctatcagGAAATGGATGATGGGCGAATGAAGTCTAGGAATAGGCCACTATCTGAAAAA
EST:
gi|162268798|gb|FC444723.1|FC444723EST: TCGTGAAGATTCGTAATGAAGCTGGAATGTTTTTGATTGAGTCTAGTCAG GAAATGGATGATGGGCGAATGAAGTCTAGGAATAGGCCACTATCTGAAAAA
genomic: TCGTGAAGATTCGTAATGAAGCTGGAATGTTTTTGATTGAGTCTAGTCAGgtatcatact ... cttctatcagGAAATGGATGATGGGCGAATGAAGTCTAGGAATAGGCCACTATCTGAAAAA
EST:
gi|162182627|gb|FC360297.1|FC360297EST: TCGTGAAGATTCGTAATGAAGCTGGAATGTTTTTGATTGAGTCTAGTCAG GAAATGGATGATGGGCGAATGAAGTCTAGGAATAGGCCACTATCTGAAAAA
genomic: TCGTGAAGATTCGTAATGAAGCTGGAATGTTTTTGATTGAGTCTAGTCAGgtatcatact ... cttctatcagGAAATGGATGATGGGCGAATGAAGTCTAGGAATAGGCCACTATCTGAAAAA
EST:
gi|162243724|gb|FC421845.1|FC421845EST: AATGAAGCTGGAATGTTTTTGATTGAGTCTAGTCAG GAAATGGATGATGGGCGAATGAAGTCTAGGAATAGGCCACTATCTGAAAAA
genomic: AATGAAGCTGGAATGTTTTTGATTGAGTCTAGTCAGgtatcatact ... cttctatcagGAAATGGATGATGGGCGAATGAAGTCTAGGAATAGGCCACTATCTGAAAAA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tcttggctttccgctgtagtgttcatgccattttgtgccatttttcttctatcagGAAATGGATGATGGGCGAATGAAGTCTAGGAATAGGCCACTATCTGAAAAAATGCGTCCCGGTGAGAACGTGGAGGACGCATGTAGAAGAGGTGTGTTTG
ccatttttcttctatc CT-rich tract
atttttctt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gatatcatatatatatatatatatatatatatgctggattgaatgtcttggctttccgctgtagtgttcatgccattttgtgccatttttcttctatcagGAAATGGATGATGGGCGAATGAAGTCTAGGAATAGGCCACTATCTGAAAAAATGCGTCCCGGTGAGAACGTGGAGGACGCATGTAGAAGAGGTGTGTTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG