1 5' 3' | 2 5' 3' | 3 5' 3' |
...gatatcatatatatatatatatatatatatatgctggattgaatgtcttggctttccgctgtagtgttcatgccattttgtgccatttttcttctatcagGAAATGGATGATGGGCGAATGAAGTCTAGGAATAGGCCACTATCTGAAAAAATGCGTCCCGGTGAGAACGTGGAGGACGCATGTAGAAGAGGTGTGTTTG
species | Physcomitrella patens |
transcript | PP1S55_58V6.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TCGTGAAGATTCGTAATGAAGCTGGAATGTTTTTGATTGAGTCTAGTCAG GAAATGGATGATGGGCGAATGAAGTCTAGGAATAGGCCACTATCTGAAAAAEST: gi|162268798|gb|FC444723.1|FC444723
genomic: TCGTGAAGATTCGTAATGAAGCTGGAATGTTTTTGATTGAGTCTAGTCAGgtatcatact ... cttctatcagGAAATGGATGATGGGCGAATGAAGTCTAGGAATAGGCCACTATCTGAAAAA
EST: TCGTGAAGATTCGTAATGAAGCTGGAATGTTTTTGATTGAGTCTAGTCAG GAAATGGATGATGGGCGAATGAAGTCTAGGAATAGGCCACTATCTGAAAAAEST: gi|162182627|gb|FC360297.1|FC360297
genomic: TCGTGAAGATTCGTAATGAAGCTGGAATGTTTTTGATTGAGTCTAGTCAGgtatcatact ... cttctatcagGAAATGGATGATGGGCGAATGAAGTCTAGGAATAGGCCACTATCTGAAAAA
EST: TCGTGAAGATTCGTAATGAAGCTGGAATGTTTTTGATTGAGTCTAGTCAG GAAATGGATGATGGGCGAATGAAGTCTAGGAATAGGCCACTATCTGAAAAAEST: gi|162243724|gb|FC421845.1|FC421845
genomic: TCGTGAAGATTCGTAATGAAGCTGGAATGTTTTTGATTGAGTCTAGTCAGgtatcatact ... cttctatcagGAAATGGATGATGGGCGAATGAAGTCTAGGAATAGGCCACTATCTGAAAAA
EST: AATGAAGCTGGAATGTTTTTGATTGAGTCTAGTCAG GAAATGGATGATGGGCGAATGAAGTCTAGGAATAGGCCACTATCTGAAAAA
genomic: AATGAAGCTGGAATGTTTTTGATTGAGTCTAGTCAGgtatcatact ... cttctatcagGAAATGGATGATGGGCGAATGAAGTCTAGGAATAGGCCACTATCTGAAAAA
tcttggctttccgctgtagtgttcatgccattttgtgccatttttcttctatcagGAAATGGATGATGGGCGAATGAAGTCTAGGAATAGGCCACTATCTGAAAAAATGCGTCCCGGTGAGAACGTGGAGGACGCATGTAGAAGAGGTGTGTTTG
ccatttttcttctatc CT-rich tract
atttttctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gatatcatatatatatatatatatatatatatgctggattgaatgtcttggctttccgctgtagtgttcatgccattttgtgccatttttcttctatcagGAAATGGATGATGGGCGAATGAAGTCTAGGAATAGGCCACTATCTGAAAAAATGCGTCCCGGTGAGAACGTGGAGGACGCATGTAGAAGAGGTGTGTTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - -tgctgga