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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CACCGCTTCTCCCTGCCGCATCTCCTCCTCCATCGCCCACTCTCTTACCCCCCTCACCACCCCGCGGTCGCCATCCCCGGTGTCGTCTCTGATTTTCGAGgtatttgtcgttattgttgtttttgttgttgatgatgattatgatggttttggatggttggggtttgggttgtgagatgttggatggtgtgcaacggggt...

Basic information

species Physcomitrella patens
transcript PP1S55_58V6.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100440114|gb|BY980402.1|BY980402
EST:     CCCTCACCACCCCGCGGTCGCCATCCCCGGTGTCGTCTCTGATTTTCGAG                         ATTTGCACATGGATTCCAGACCTTGGGATAGAAGTAATCGGGACTGACCCA
genomic: CCCTCACCACCCCGCGGTCGCCATCCCCGGTGTCGTCTCTGATTTTCGAGgtatttgtcg ... gccatcgcagATTTGCACATGGATTCCAGACCTTGGGATAGAAGTAATCGGGACTGACCCA
EST: gi|162277636|gb|FC453267.1|FC453267
EST:     CCCTCACCACCCCGCGGTCGCCATCCCCGGTGTCGTCTCTGATTTTCGAG                         ATTTGCACATGGATTCCAGACCTTGGGATAGAAGTAATCGGGACTGACCCA
genomic: CCCTCACCACCCCGCGGTCGCCATCCCCGGTGTCGTCTCTGATTTTCGAGgtatttgtcg ... gccatcgcagATTTGCACATGGATTCCAGACCTTGGGATAGAAGTAATCGGGACTGACCCA
EST: gi|208371566|gb|DC936287.1|DC936287
EST:     CCCTCACCACCCCGCGGTCGCCATCCCCGGTGTCGTCTCTGATTTTCGAG                         ATTTGCACATGGATTCCAGACCTTGGGATAGAAGTAATCGGGACTGACCCA
genomic: CCCTCACCACCCCGCGGTCGCCATCCCCGGTGTCGTCTCTGATTTTCGAGgtatttgtcg ... gccatcgcagATTTGCACATGGATTCCAGACCTTGGGATAGAAGTAATCGGGACTGACCCA
EST: gi|162228158|gb|FC405935.1|FC405935
EST:     CCCTCACCACCCCGCGGTCGCCATCCCCGGTGTCGTCTCTGATTTTCGAG                         ATTTGCACATGGATTCCAGACCTTGGGATAGAAGTAATCGGGACTGACCCA
genomic: CCCTCACCACCCCGCGGTCGCCATCCCCGGTGTCGTCTCTGATTTTCGAGgtatttgtcg ... gccatcgcagATTTGCACATGGATTCCAGACCTTGGGATAGAAGTAATCGGGACTGACCCA
EST: gi|18362606|gb|BJ194677.1|BJ194677
EST:     CCCTCACCACCCCGCGGTCGCCATCCCCGGTGTCGTCTCTGATTTTCGAG                         ATTTGCACATGGATTCCAGACCTTGGGATAGAAGTAATCGGGACTGACCCA
genomic: CCCTCACCACCCCGCGGTCGCCATCCCCGGTGTCGTCTCTGATTTTCGAGgtatttgtcg ... gccatcgcagATTTGCACATGGATTCCAGACCTTGGGATAGAAGTAATCGGGACTGACCCA
EST: gi|18366777|gb|BJ198856.1|BJ198856
EST:     CCCTCACCACCCCGCGGTCGCCATCCCCGGTGTCGTCTCTGATTTTCGAG                         ATTTGCACATGGATTCCAGACCTTGGGATAGAAGTAATCGGGACTGACCCA
genomic: CCCTCACCACCCCGCGGTCGCCATCCCCGGTGTCGTCTCTGATTTTCGAGgtatttgtcg ... gccatcgcagATTTGCACATGGATTCCAGACCTTGGGATAGAAGTAATCGGGACTGACCCA
EST: gi|18344151|gb|BJ176190.1|BJ176190
EST:     CCCTCACCACCCCGCGGTCGCCATCCCCGGTGTCGTCTCTGATTTTCGAG                         ATTTGCACATGGATTCCAGACCTTGGGATAGAAGTAATCGGGACTGACCCA
genomic: CCCTCACCACCCCGCGGTCGCCATCCCCGGTGTCGTCTCTGATTTTCGAGgtatttgtcg ... gccatcgcagATTTGCACATGGATTCCAGACCTTGGGATAGAAGTAATCGGGACTGACCCA
EST: gi|162162277|gb|FC338059.1|FC338059
EST:     CCCTCACCACCCCGCGGTCGCCATCCCCGGTGTCGTCTCTGATTTTCGAG                         ATTTGCACATGGATTCCAGACCTTGGGATAGAAGTAATCGGGACTGACCCA
genomic: CCCTCACCACCCCGCGGTCGCCATCCCCGGTGTCGTCTCTGATTTTCGAGgtatttgtcg ... gccatcgcagATTTGCACATGGATTCCAGACCTTGGGATAGAAGTAATCGGGACTGACCCA
EST: gi|67569727|gb|BJ942551.1|BJ942551
EST:     CCCTCACCACCCCGCGGTCGCCATCCCCGGTGTCGTCTCTGATTTTCGAG                         ATTTGCACATGGATTCCAGACCTTGGGATAGAAGTAATCGGGACTGACCCA
genomic: CCCTCACCACCCCGCGGTCGCCATCCCCGGTGTCGTCTCTGATTTTCGAGgtatttgtcg ... gccatcgcagATTTGCACATGGATTCCAGACCTTGGGATAGAAGTAATCGGGACTGACCCA