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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTCTTGAGAAGAGAAAAATACAGTCGGAGTGTTCTGTTCTCCATCACCATTATCGCTGATGAAGAAGTGAGGAGCTTCTGAGAGGCAGAGTTGCATCAGgtttgtcctctgcatttccatgccgtatgcttgattgtggtaactacatggattgtctatgaagaagagagagttgaaccaagatttcgaagggatgtga...

Basic information

species Physcomitrella patens
transcript PP1S55_50V6.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100414332|gb|BY992724.1|BY992724
EST:     TTATCGCTGATGAAGAAGTGAGGAGCTTCTGAGAGGCAGAGTTGCATCAG                         GTTGTAACAAAACGCGATTCCTTCAGTGTCGAATCACCAGCAGGAGGCTTA
genomic: TTATCGCTGATGAAGAAGTGAGGAGCTTCTGAGAGGCAGAGTTGCATCAGgtttgtcctc ... aatttaacagGTTGTAACAAAACGCGATTCCTTCAGTGTCGAATCACCAGCAGGAGGCTTA
EST: gi|100415621|gb|BY992924.1|BY992924
EST:     TTATCGCTGATGAAGAAGTGAGGAGCTTCTGAGAGGCAGAGTTGCATCAG                         GTTGTAACAAAACGCGATTCCTTCAGTGTCGAATCACCAGCAGGAGGCTTA
genomic: TTATCGCTGATGAAGAAGTGAGGAGCTTCTGAGAGGCAGAGTTGCATCAGgtttgtcctc ... aatttaacagGTTGTAACAAAACGCGATTCCTTCAGTGTCGAATCACCAGCAGGAGGCTTA
EST: gi|208353253|gb|DC913565.1|DC913565
EST:     TTATCGCTGATGAAGAAGTGAGGAGCTTCTGAGAGGCAGAGTTGCATCAG                         GTTGTAACAAAACGCGATTCCTTCAGTGTCGAATCACCAGCAGGAGGCTTA
genomic: TTATCGCTGATGAAGAAGTGAGGAGCTTCTGAGAGGCAGAGTTGCATCAGgtttgtcctc ... aatttaacagGTTGTAACAAAACGCGATTCCTTCAGTGTCGAATCACCAGCAGGAGGCTTA
EST: gi|162266938|gb|FC443026.1|FC443026
EST:     TTATCGCTGATGAAGAAGTGAGGAGCTTCTGAGAGGCAGAGTTGCATCAG                         GTTGTAACAAAACGCGATTCCTTCAGTGTCGAATCACCAGCAGGAGGCTTA
genomic: TTATCGCTGATGAAGAAGTGAGGAGCTTCTGAGAGGCAGAGTTGCATCAGgtttgtcctc ... aatttaacagGTTGTAACAAAACGCGATTCCTTCAGTGTCGAATCACCAGCAGGAGGCTTA
EST: gi|162280283|gb|FC456300.1|FC456300
EST:     TTATCGCTGATGAAGAAGTGAGGAGCTTCTGAGAGGCAGAGTTGCATCAG                         GTTGTAACAAAACGCGATTCCTTCAGTGTCGAATCACCAGCAGGAGGCTTA
genomic: TTATCGCTGATGAAGAAGTGAGGAGCTTCTGAGAGGCAGAGTTGCATCAGgtttgtcctc ... aatttaacagGTTGTAACAAAACGCGATTCCTTCAGTGTCGAATCACCAGCAGGAGGCTTA
EST: gi|162176232|gb|FC352689.1|FC352689
EST:     TTATCGCTGATGAAGAAGTGAGGAGCTTCTGAGAGGCAGAGTTGCATCAG                         GTTGTAACAAAACGCGATTCCTTCAGTGTCGAATCACCAGCAGGAGGCTTA
genomic: TTATCGCTGATGAAGAAGTGAGGAGCTTCTGAGAGGCAGAGTTGCATCAGgtttgtcctc ... aatttaacagGTTGTAACAAAACGCGATTCCTTCAGTGTCGAATCACCAGCAGGAGGCTTA
EST: gi|100444305|gb|BY982334.1|BY982334
EST:     TTATCGCTGATGAAGAAGTGAGGAGCTTCTGAGAGGCAGAGTTGCATCAG                         GTTGTAACAAAACGCGATTCCTTCAGTGTCGAATCACCAGCAGGAGGCTTA
genomic: TTATCGCTGATGAAGAAGTGAGGAGCTTCTGAGAGGCAGAGTTGCATCAGgtttgtcctc ... aatttaacagGTTGTAACAAAACGCGATTCCTTCAGTGTCGAATCACCAGCAGGAGGCTTA
EST: gi|100387252|gb|BY970396.1|BY970396
EST:     TTATCGCTGATGAAGAAGTGAGGAGCTTCTGAGAGGCAGAGTTGCATCAG                         GTTGTAACAAAACGCGATTCCTTCAGTGTCGAATCACCAGCAGGAGGCTTA
genomic: TTATCGCTGATGAAGAAGTGAGGAGCTTCTGAGAGGCAGAGTTGCATCAGgtttgtcctc ... aatttaacagGTTGTAACAAAACGCGATTCCTTCAGTGTCGAATCACCAGCAGGAGGCTTA
EST: gi|67575977|gb|BJ948801.1|BJ948801
EST:     TTATCGCTGATGAAGAAGTGAGGAGCTTCTGAGAGGCAGAGTTGCATCAG                         GTTGTAACAAAACGCGATTCCTTCAGTGTCGAATCACCAGCAGGAGGCTTA
genomic: TTATCGCTGATGAAGAAGTGAGGAGCTTCTGAGAGGCAGAGTTGCATCAGgtttgtcctc ... aatttaacagGTTGTAACAAAACGCGATTCCTTCAGTGTCGAATCACCAGCAGGAGGCTTA
EST: gi|100410321|gb|BY992048.1|BY992048
EST:     TTATCGCTGATGAAGAAGTGAGGAGCTTCTGAGAGGCAGAGTTGCATCAG                         GTTGTAACAAAACGCGATTCCTTCAGTGTCGAATCACCAGCAGGAGGCTTA
genomic: TTATCGCTGATGAAGAAGTGAGGAGCTTCTGAGAGGCAGAGTTGCATCAGgtttgtcctc ... aatttaacagGTTGTAACAAAACGCGATTCCTTCAGTGTCGAATCACCAGCAGGAGGCTTA
EST: gi|18373389|gb|BJ204967.1|BJ204967
EST:     GAGGAGCTTCTGAGAGGCAGAGTTGCATCAG                         GTTGTAACAAAACGCGATTCCTTCAGTGTCGAATCACCAGCAGGAGGCTTA
genomic: GAGGAGCTTCTGAGAGGCAGAGTTGCATCAGgtttgtcctc ... aatttaacagGTTGTAACAAAACGCGATTCCTTCAGTGTCGAATCACCAGCAGGAGGCTTA
EST: gi|100384687|gb|BY950677.1|BY950677
EST:     TTATCGCTGATGAAGAAGTGAGGAGCTTCTGAGAGGCAGAGTTGCATCAG                         GTTGTAACAAAACGCGATTCCTTCAGTGTCGAATCACCAGCAGGAGGCTTA
genomic: TTATCGCTGATGAAGAAGTGAGGAGCTTCTGAGAGGCAGAGTTGCATCAGgtttgtcctc ... aatttaacagGTTGTAACAAAACGCGATTCCTTCAGTGTCGAATCACCAGCAGGAGGCTTA
EST: gi|100359776|gb|BY947125.1|BY947125
EST:     TTATCGCTGATGAAGAAGTGAGGAGCTTCTGAGAGGCAGAGTTGCATCAG                         GTTGTAACAAAACGCGATTCCTTCAGTGTCGAATCACCAGCAGGAGGCTTA
genomic: TTATCGCTGATGAAGAAGTGAGGAGCTTCTGAGAGGCAGAGTTGCATCAGgtttgtcctc ... aatttaacagGTTGTAACAAAACGCGATTCCTTCAGTGTCGAATCACCAGCAGGAGGCTTA
EST: gi|100398895|gb|BY990569.1|BY990569
EST:     TTATCGCTGATGAAGAAGTGAGGAGCTTCTGAGAGGCAGAGTTGCATCAG                         GTTGTAACAAAACGCGATTCCTTCAGTGTCGAATCACCAGCAGGAGGCTTA
genomic: TTATCGCTGATGAAGAAGTGAGGAGCTTCTGAGAGGCAGAGTTGCATCAGgtttgtcctc ... aatttaacagGTTGTAACAAAACGCGATTCCTTCAGTGTCGAATCACCAGCAGGAGGCTTA
EST: gi|100400151|gb|BY990804.1|BY990804
EST:     TTATCGCTGATGAAGAAGTGAGGAGCTTCTGAGAGGCAGAGTTGCATCAG                         GTTGTAACAAAACGCGATTCCTTCAGTGTCGAATCACCAGCAGGAGGCTTA
genomic: TTATCGCTGATGAAGAAGTGAGGAGCTTCTGAGAGGCAGAGTTGCATCAGgtttgtcctc ... aatttaacagGTTGTAACAAAACGCGATTCCTTCAGTGTCGAATCACCAGCAGGAGGCTTA
EST: gi|18366081|gb|BJ198159.1|BJ198159
EST:     GAGGAGCTTCTGAGAGGCAGAGTTGCATCAG                         GTTGTAACAAAACGCGATTCCTTCAGTGTCGAATCACCAGCAGGAGGCTTA
genomic: GAGGAGCTTCTGAGAGGCAGAGTTGCATCAGgtttgtcctc ... aatttaacagGTTGTAACAAAACGCGATTCCTTCAGTGTCGAATCACCAGCAGGAGGCTTA
EST: gi|100425347|gb|BY958549.1|BY958549
EST:     TTATCGCTGATGAAGAAGTGAGGAGCTTCTGAGAGGCAGAGTTGCATCAG                         GTTGTAACAAAACGCGATTCCTTCAGTGTCGAATCACCAGCAGGAGGCTTA
genomic: TTATCGCTGATGAAGAAGTGAGGAGCTTCTGAGAGGCAGAGTTGCATCAGgtttgtcctc ... aatttaacagGTTGTAACAAAACGCGATTCCTTCAGTGTCGAATCACCAGCAGGAGGCTTA
EST: gi|100441437|gb|BY980859.1|BY980859
EST:     TTATCGCTGATGAAGAAGTGAGGAGCTTCTGAGAGGCAGAGTTGCATCAG                         GTTGTAACAAAACGCGATTCCTTCAGTGTCGAATCACCAGCAGGAGGCTTA
genomic: TTATCGCTGATGAAGAAGTGAGGAGCTTCTGAGAGGCAGAGTTGCATCAGgtttgtcctc ... aatttaacagGTTGTAACAAAACGCGATTCCTTCAGTGTCGAATCACCAGCAGGAGGCTTA
EST: gi|100398532|gb|BY972659.1|BY972659
EST:     TTATCGCTGATGAAGAAGTGAGGAGCTTCTGAGAGGCAGAGTTGCATCAG                         GTTGTAACAAAACGCGATTCCTTCAGTGTCGAATCACCAGCAGGAGGCTTA
genomic: TTATCGCTGATGAAGAAGTGAGGAGCTTCTGAGAGGCAGAGTTGCATCAGgtttgtcctc ... aatttaacagGTTGTAACAAAACGCGATTCCTTCAGTGTCGAATCACCAGCAGGAGGCTTA
EST: gi|100397643|gb|BY990329.1|BY990329
EST:     TTATCGCTGATGAAGAAGTGAGGAGCTTCTGAGAGGCAGAGTTGCATCAG                         GTTGTAACAAAACGCGATTCCTTCAGTGTCGAATCACCAGCAGGAGGCTTA
genomic: TTATCGCTGATGAAGAAGTGAGGAGCTTCTGAGAGGCAGAGTTGCATCAGgtttgtcctc ... aatttaacagGTTGTAACAAAACGCGATTCCTTCAGTGTCGAATCACCAGCAGGAGGCTTA
EST: gi|100421239|gb|BY976131.1|BY976131
EST:     TTATCGCTGATGAAGAAGTGAGGAGCTTCTGAGAGGCAGAGTTGCATCAG                         GTTGTAACAAAACGCGATTCCTTCAGTGTCGAATCACCAGCAGGAGGCTTA
genomic: TTATCGCTGATGAAGAAGTGAGGAGCTTCTGAGAGGCAGAGTTGCATCAGgtttgtcctc ... aatttaacagGTTGTAACAAAACGCGATTCCTTCAGTGTCGAATCACCAGCAGGAGGCTTA
EST: gi|100450819|gb|CJ974455.1|CJ974455
EST:     TTATCGCTGATGAAGAAGTGAGGAGCTTCTGAGAGGCAGAGTTGCATCAG                         GTTGTAACAAAACGCGATTCCTTCAGTGTCGAATCACCAGCAGGAGGCTTA
genomic: TTATCGCTGATGAAGAAGTGAGGAGCTTCTGAGAGGCAGAGTTGCATCAGgtttgtcctc ... aatttaacagGTTGTAACAAAACGCGATTCCTTCAGTGTCGAATCACCAGCAGGAGGCTTA
EST: gi|208346645|gb|DC913291.1|DC913291
EST:     TTATCGCTGATGAAGAAGTGAGGAGCTTCTGAGAGGCAGAGTTGCATCAG                         GTTGTAACAAAACGCGATTCCTTCAGTGTCGAATCACCAGCAGGAGGCTTA
genomic: TTATCGCTGATGAAGAAGTGAGGAGCTTCTGAGAGGCAGAGTTGCATCAGgtttgtcctc ... aatttaacagGTTGTAACAAAACGCGATTCCTTCAGTGTCGAATCACCAGCAGGAGGCTTA
EST: gi|100444316|gb|BY982345.1|BY982345
EST:     TTATCGCTGATGAAGAAGTGAGGAGCTTCTGAGAGGCAGAGTTGCATCAG                         GTTGTAACAAAACGCGATTCCTTCAGTGTCGAATCACCAGCAGGAGGCTTA
genomic: TTATCGCTGATGAAGAAGTGAGGAGCTTCTGAGAGGCAGAGTTGCATCAGgtttgtcctc ... aatttaacagGTTGTAACAAAACGCGATTCCTTCAGTGTCGAATCACCAGCAGGAGGCTTA
EST: gi|162257356|gb|FC433439.1|FC433439
EST:     TTATCGCTGATGAAGAAGTGAGGAGCTTCTGAGAGGCAGAGTTGCATCAG                         GTTGTAACAAAACGCGATTCCTTCAGTGTCGAATCACCAGCAGGAGGCTTA
genomic: TTATCGCTGATGAAGAAGTGAGGAGCTTCTGAGAGGCAGAGTTGCATCAGgtttgtcctc ... aatttaacagGTTGTAACAAAACGCGATTCCTTCAGTGTCGAATCACCAGCAGGAGGCTTA
EST: gi|100436025|gb|BY979342.1|BY979342
EST:     TTATCGCTGATGAAGAAGTGAGGAGCTTCTGAGAGGCAGAGTTGCATCAG                         GTTGTAACAAAACGCGATTCCTTCAGTGTCGAATCACCAGCAGGAGGCTTA
genomic: TTATCGCTGATGAAGAAGTGAGGAGCTTCTGAGAGGCAGAGTTGCATCAGgtttgtcctc ... aatttaacagGTTGTAACAAAACGCGATTCCTTCAGTGTCGAATCACCAGCAGGAGGCTTA
EST: gi|100444175|gb|BY964073.1|BY964073
EST:     TTATCGCTGATGAAGAAGTGAGGAGCTTCTGAGAGGCAGAGTTGCATCAG                         GTTGTAACAAAACGCGATTCCTTCAGTGTCGAATCACCAGCAGGAGGCTTA
genomic: TTATCGCTGATGAAGAAGTGAGGAGCTTCTGAGAGGCAGAGTTGCATCAGgtttgtcctc ... aatttaacagGTTGTAACAAAACGCGATTCCTTCAGTGTCGAATCACCAGCAGGAGGCTTA
EST: gi|100442051|gb|BY962944.1|BY962944
EST:     TTATCGCTGATGAAGAAGTGAGGAGCTTCTGAGAGGCAGAGTTGCATCAG                         GTTGTAACAAAACGCGATTCCTTCAGTGTCGAATCACCAGCAGGAGGCTTA
genomic: TTATCGCTGATGAAGAAGTGAGGAGCTTCTGAGAGGCAGAGTTGCATCAGgtttgtcctc ... aatttaacagGTTGTAACAAAACGCGATTCCTTCAGTGTCGAATCACCAGCAGGAGGCTTA
EST: gi|100376929|gb|BY949534.1|BY949534
EST:     TTATCGCTGATGAAGAAGTGAGGAGCTTCTGAGAGGCAGAGTTGCATCAG                         GTTGTAACAAAACGCGATTCCTTCAGTGTCGAATCACCAGCAGGAGGCTTA
genomic: TTATCGCTGATGAAGAAGTGAGGAGCTTCTGAGAGGCAGAGTTGCATCAGgtttgtcctc ... aatttaacagGTTGTAACAAAACGCGATTCCTTCAGTGTCGAATCACCAGCAGGAGGCTTA
EST: gi|162272663|gb|FC448289.1|FC448289
EST:     AGTGAGGAGCTTCTGAGAGGCAGAGTTGCATCAG                         GTTGTAACAAAACGCGATTCCTTCAGTGTCGAATCACCAGCAGGAGGCTTA
genomic: AGTGAGGAGCTTCTGAGAGGCAGAGTTGCATCAGgtttgtcctc ... aatttaacagGTTGTAACAAAACGCGATTCCTTCAGTGTCGAATCACCAGCAGGAGGCTTA
EST: gi|100352260|gb|BY983119.1|BY983119
EST:     TTATCGCTGATGAAGAAGTGAGGAGCTTCTGAGAGGCAGAGTTGCATCAG                         GTTGTAACAAAACGCGATTCCTTCAGTGTCGAATCACCAGCAGGAGGCTTA
genomic: TTATCGCTGATGAAGAAGTGAGGAGCTTCTGAGAGGCAGAGTTGCATCAGgtttgtcctc ... aatttaacagGTTGTAACAAAACGCGATTCCTTCAGTGTCGAATCACCAGCAGGAGGCTTA
EST: gi|162261549|gb|FC437566.1|FC437566
EST:     CGCTGATGAAGAAGTGAGGAGCTTCTGAGAGGCAGAGTTGCATCAGG                         GTTGTAACAAAACGCGATTCCTTCAGTGTCGAATCACCAGCAGGAGGCTT
genomic: CGCTGATGAAGAAGTGAGGAGCTTCTGAGAGGCAGAGTTGCATCA-Ggtttgtcctc ... aatttaacagGTTGTAACAAAACGCGATTCCTTCAGTGTCGAATCACCAGCAGGAGGCTT
EST: gi|100412455|gb|BY974742.1|BY974742
EST:     TTATCGCTGATGAAGAAGTGAGGAGCTTCTGAGAGGCAGAGTTGCATCAG                         GTTGTAACAAAACGCGATTCCTTCAGTGTCGAATCACCAGCAGGAGGCTTA
genomic: TTATCGCTGATGAAGAAGTGAGGAGCTTCTGAGAGGCAGAGTTGCATCAGgtttgtcctc ... aatttaacagGTTGTAACAAAACGCGATTCCTTCAGTGTCGAATCACCAGCAGGAGGCTTA
EST: gi|100417038|gb|BY993213.1|BY993213
EST:     TTATCGCTGATGAAGAAGTGAGGAGCTTCTGAGAGGCAGAGTTGCATCAG                         GTTGTAACAAAACGCGATTCCTTCAGTGTCGAATCACCAGCAGGAGGCTTA
genomic: TTATCGCTGATGAAGAAGTGAGGAGCTTCTGAGAGGCAGAGTTGCATCAGgtttgtcctc ... aatttaacagGTTGTAACAAAACGCGATTCCTTCAGTGTCGAATCACCAGCAGGAGGCTTA
EST: gi|18363040|gb|BJ195112.1|BJ195112
EST:     GAGGAGCTTCTGAGAGGCAGAGTTGCATCAG                         GTTGTAACAAAACGCGATTCCTTCAGTGTCGAATCACCAGCAGGAGGCTTA
genomic: GAGGAGCTTCTGAGAGGCAGAGTTGCATCAGgtttgtcctc ... aatttaacagGTTGTAACAAAACGCGATTCCTTCAGTGTCGAATCACCAGCAGGAGGCTTA
EST: gi|100443829|gb|BY982057.1|BY982057
EST:     TTATCGCTGATGAAGAAGTGAGGAGCTTCTGAGAGGCAGAGTTGCATCAG                         GTTGTAACAAAACGCGATTCCTTCAGTGTCGAATCACCAGCAGGAGGCTTA
genomic: TTATCGCTGATGAAGAAGTGAGGAGCTTCTGAGAGGCAGAGTTGCATCAGgtttgtcctc ... aatttaacagGTTGTAACAAAACGCGATTCCTTCAGTGTCGAATCACCAGCAGGAGGCTTA
EST: gi|100442125|gb|BY963018.1|BY963018
EST:     TTATCGCTGATGAAGAAGTGAGGAGCTTCTGAGAGGCAGAGTTGCATCAG                         GTTGTAACAAAACGCGATTCCTTCAGTGTCGAATCACCAGCAGGAGGCTTA
genomic: TTATCGCTGATGAAGAAGTGAGGAGCTTCTGAGAGGCAGAGTTGCATCAGgtttgtcctc ... aatttaacagGTTGTAACAAAACGCGATTCCTTCAGTGTCGAATCACCAGCAGGAGGCTTA
EST: gi|100364915|gb|BY947972.1|BY947972
EST:     TTATCGCTGATGAAGAAGTGAGGAGCTTCTGAGAGGCAGAGTTGCATCAG                         GTTGTAACAAAACGCGATTCCTTCAGTGTCGAATCACCAGCAGGAGGCTTA
genomic: TTATCGCTGATGAAGAAGTGAGGAGCTTCTGAGAGGCAGAGTTGCATCAGgtttgtcctc ... aatttaacagGTTGTAACAAAACGCGATTCCTTCAGTGTCGAATCACCAGCAGGAGGCTTA
EST: gi|100426080|gb|BY977267.1|BY977267
EST:     TTATCGCTGATGAAGAAGTGAGGAGCTTCTGAGAGGCAGAGTTGCATCAG                         GTTGTAACAAAACGCGATTCCTTCAGTGTCGAATCACCAGCAGGAGGCTTA
genomic: TTATCGCTGATGAAGAAGTGAGGAGCTTCTGAGAGGCAGAGTTGCATCAGgtttgtcctc ... aatttaacagGTTGTAACAAAACGCGATTCCTTCAGTGTCGAATCACCAGCAGGAGGCTTA
EST: gi|100354089|gb|BY945705.1|BY945705
EST:     TTATCGCTGATGAAGAAGTGAGGAGCTTCTGAGAGGCAGAGTTGCATCAG                         GTTGTAACAAAACGCGATTCCTTCAGTGTCGAATCACCAGCAGGAGGCTTA
genomic: TTATCGCTGATGAAGAAGTGAGGAGCTTCTGAGAGGCAGAGTTGCATCAGgtttgtcctc ... aatttaacagGTTGTAACAAAACGCGATTCCTTCAGTGTCGAATCACCAGCAGGAGGCTTA
EST: gi|100445608|gb|CJ975757.1|CJ975757
EST:     TTATCGCTGATGAAGAAGTGAGGAGCTTCTGAGAGGCAGAGTTGCATCAG                         GTTGTAACAAAACGCGATTCCTTCAGTGTCGAATCACCAGCAGGAGGCTTA
genomic: TTATCGCTGATGAAGAAGTGAGGAGCTTCTGAGAGGCAGAGTTGCATCAGgtttgtcctc ... aatttaacagGTTGTAACAAAACGCGATTCCTTCAGTGTCGAATCACCAGCAGGAGGCTTA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 32 (upstream exon), 33 (downstream exon)
Score: 14

TTTCTTGAGAAGAGAAAAATACAGTCGGAGTGTTCTGTTCTCCATCACCATTATCGCTGATGAAGAAGTGAGGAGCTTCTGAGAGGCAGAGTTGCATCAGgtttgtcctc ... aatttaacagGTTGTAACAAAACGCGATTCCTTCAGTGTCGAATCACCAGCAGGAGGCTTAAAAATGGTAGGGAATGGCAGAAGAATGAACCGCTTGGTGGCGTTCTTAG




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TTTCTTGAGAAGAGAAAAATACAGTCGGAGTGTTCTGTTCTCCATCACCATTATCGCTGATGAAGAAGTGAGGAGCTTCTGAGAGGCAGAGTTGCATCAGgtttgtcctctgcatttccatgccgtatgcttgattgtggtaactacatggattgtctatgaagaagagagagttgaaccaagatttcgaagggatgtga

- - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG