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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGGCTCGTGGAAACAAGACAAAGCCTGTCATTGAAATGACCAAGTGGTTCGACACCAATTAgtacgtgctggctccggacctatttggtttattgctttgttcagatgattgtgagtgggtgagtttgagagtgagctgggaaggctaatcgtcagttgagttatgtgtgcag

Basic information

species Physcomitrella patens
transcript PP1S55_44V6.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S55_44V6.1 (Physcomitrella patens), 5'ss of exon 1
lower sequence: GLYMA13G15140.2 (Glycine max), 5'ss of exon 2
--------------------------------------ATGGCTCGTGGAAACAAGACAAAGCCTGTCATTGAAATGACCAAGTGGTTCGACACCAATTAgtacgtgctggctccggacctatttggtttattgctttgttcagatgattgtgagtgggtgagtttgagagtgagctgggaaggctaatcgtcagttgagttatgtgtgcag
                                      |||||  | || ||     |    || |  || ||||||||||||||||| |||||||||||||| ||      |||   ||  | |   ||   | ||||  || || ||| ||| |      | || | |      ||  | || || |       ||| ||   || | | 
GGAATGGTGGGGAGATTGGGTTTGATGTTTACTTCTCAATGGCAAGAGGGAATGCATCTGTACCAGCTATGGAAATGACCAAGTGGTTTGACACCAATTAgtaagtaaatcatccc--cccttctaaatttgagttttg--catat-attttgattaaacatgattaaaa------tgaaagggttagtgtatgaatgattttgatgggga-

upper sequence: PP1S55_44V6.1 (Physcomitrella patens), 5'ss of exon 1
lower sequence: GLYMA19G29180.2 (Glycine max), 5'ss of exon 2
--------------------------------------ATGGCTCGTGGAAACAAGACAAAGCCTGTCATTGAAATGACCAAGTGGTTCGACACCAATTAgtacgtgctggctccggacctatttggtttattgctttgttcagatgattgtgagtgggtgagtttgagagtgagctgggaaggctaatcg-tcagttgagttatgtgtgcag------
                                      |||||  | || ||    ||   |||||  || || ||||||||||||||||||||||| ||||| ||| ||   ||   |||| |     || |||| | |   |||  | | || ||      | | ||  || |  |  | |    || | | |  ||   | | ||||| |      
GGACCGGCGGCGAGATTGGATTCGACACCTACTTCTCCATGGCCAGAGGTAATGCTACCGTGCCTGCTATGGAGATGACCAAGTGGTTCGACACCAACTAgtaagtgatgatgcct--cctaatc--cctaatgctgtat---gatattcg-gaatgttcttttattagt-tgtgtcgtaatgatctattgctgaactgttgtgtttgtgctgatccag

upper sequence: PP1S55_44V6.1 (Physcomitrella patens), 5'ss of exon 1
lower sequence: GLYMA16G04240.1 (Glycine max), 5'ss of exon 2
--------------------------------------ATGGCTCGTGGAAACAAGACAAAGCCTGTCATTGAAATGACCAAGTGGTTCGACACCAATTAgtacgtgctggctccggacctatttggtttattgctttgttcagatgattgtgagtgggtgagtttgagagtgagctgggaaggctaatcgtcagttgagttatgtgtgcag
                                      |||||  | || ||    ||   ||| |  || || ||||||||||||||||||||||| ||||| ||| ||   ||              || |||| | |||   | || ||| || | || | |    | ||| |||        ||| || | ||  ||  ||  | |||
GGACCGGCGGCGAGATTGGGTTTGATACCTACTTCTCCATGGCCAGAGGTAATGCTACCGTGCCAGCTATGGAGATGACCAAGTGGTTCGACACCAACTAgtaagtgatgatgcct-----------cctaatgctgtcttctattaatggtgtgttgttgtggt--gtaatgatctgattcc-tgaattgttatttttgtgttg-atccag

upper sequence: PP1S55_44V6.1 (Physcomitrella patens), 5'ss of exon 1
lower sequence: Vv06s0009g01080.t01 (Vitis vinifera), 5'ss of exon 2
--------------------------------------ATGGCTCGTGGAAACAAGACAAAGCCTGTCATTGAAATGACCAAGTGGTTCGACACCAATTAgtacgtgctggctccggacctatttggtttattgctttgttcagatgattgtgagtgggtgagtttgagagtgagctgggaaggctaatcgtcagttgagttatgtgtgcag
                                      |||||| | || ||     |     | | ||| |||||||||||||||||||||||||| ||||  ||| || |  |   |   | |  | |  ||  |  || ||||||||   |||       |||    |||   |         | |  | | |    || |   | |||
GGAATGGTGGGGAAATTGGGTTTGATGCCTACTTTTCCATGGCTAGGGGCAATGCCTCTGTAACAGCCATGGAAATGACCAAGTGGTTCGACACCAACTAgtgagtgatgacctctctctcttctcatgtcctgagtgatttagatgattt--agtaatcctttttactggtgtagttaagccatgacttatgaatgtgatttttgatacag