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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgagactgacacggagaattctctagtaacaatttgtgggtctattgaccgagttggcatcagtcttcattttgtcaactgagttgattccttcctcattccgttgcttgtcataaatttatggagatgaagtgtcaacaatcgcttggactaagtttgcgccgatggtttgcctcgcagcagTGGCTGATTAGCTGGTGGCTTTGTCACGGATTCAGTTCGTGTGCTCTTGCCTTACTATAGAGATTCCAGGATTTTCCAGGACATCGACAAGTGCATGAGA

Basic information

species Physcomitrella patens
transcript PP1S55_32V6.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18372316|gb|BJ203918.1|BJ203918
EST:     TGAGTCGATTGGAAAGCTTTGATTGCATTCGCCTTGTGACCTTGAGAGGG                         TGGCTGATTAGCTGGTGGCTTTGTCACGGATTCAGTTCGTGTGCTCTTGCC
genomic: TGAGTCGATTGGAAAGCTTTGATTGCATTCGCCTTGTGACCTTGAGAGGGgtatgagact ... ctcgcagcagTGGCTGATTAGCTGGTGGCTTTGTCACGGATTCAGTTCGTGTGCTCTTGCC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gaagtgtcaacaatcgcttggactaagtttgcgccgatggtttgcctcgcagcagTGGCTGATTAGCTGGTGGCTTTGTCACGGATTCAGTTCGTGTGCTCTTGCCTTACTATAGAGATTCCAGGATTTTCCAGGACATCGACAAGTGCATGAGA
                                        tttgcctc  CT-rich tract
                       taagttt  TA-rich tract