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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ggcttacacaggctgatttgatttattatcgccaatatctgatctgtttttgaaaagttgtgcccccattgtcactattgatctttttaccttcctgcagGTTGTGCAGGTGAATCTGCCATGAGATGGGAGCACCCTCACTTTCACAGTCAGAATAGACTCCATGCAAACATATCACCAAGTGTGAGAATTTAGAACCA

Basic information

species Physcomitrella patens
transcript PP1S55_304V6.2
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162258515|gb|FC434730.1|FC434730
EST:     AAGCTCTAGCAGGGGGCCATCTGAGCATCCGATTCCCGTTGGGCCAGAAG                         GTTGTGCAGGTGAATCTGCCATGAGATGGGAGCACCCTCACTTTCACAGTC
genomic: AAGCTCTAGCAGGGGGCCATCTGAGCATCCGATTCCCGTTGGGCCAGAAGgtacagatta ... cttcctgcagGTTGTGCAGGTGAATCTGCCATGAGATGGGAGCACCCTCACTTTCACAGTC
EST: gi|37845624|gb|BJ603632.1|BJ603632
EST:     AAGCTCTAGCAGGGGGCCATCTGAGCATCCGATTCCCGTTGGGCCAGAAG                         GTTGTGCAGGTGAATCTGCCATGAGATGGGAGCACCCTCACTTTCACAGTC
genomic: AAGCTCTAGCAGGGGGCCATCTGAGCATCCGATTCCCGTTGGGCCAGAAGgtacagatta ... cttcctgcagGTTGTGCAGGTGAATCTGCCATGAGATGGGAGCACCCTCACTTTCACAGTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtttttgaaaagttgtgcccccattgtcactattgatctttttaccttcctgcagGTTGTGCAGGTGAATCTGCCATGAGATGGGAGCACCCTCACTTTCACAGTCAGAATAGACTCCATGCAAACATATCACCAAGTGTGAGAATTTAGAACCA
                              tattgat  putative branch site (score: 3)
                                    tctttttaccttcctg  CT-rich tract
                              tattgatcttttta  TA-rich tract