1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...ttttgatttgaatttagtcgtggctggttactcttagcgaagccatatttgatgtgtggattctattttgcactgattgtcgtgtacatttgttgtgcagTTGAATGAGACTACGTTGGAAAAAGCGTTAGACCTGGTGCACAGTAGCAATGGGACGTACATGGCAGTGCTCCATTATGCAACGTGGTGCCCTTTTTCGA
species | Physcomitrella patens |
transcript | PP1S55_276V6.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AGCACAATCATGCTGNCTNTGACCAGCCACTNTCCGCTCGAGTTGCGGAG TTGAATGAGACTACGTTGGGAAAAAGCGTTAGGCCTGGTGCACAGTAGCAAEST: gi|162263049|gb|FC439338.1|FC439338
genomic: AGCACAATCATGCTGCCTCTGACCAGCCACTATCCGCTCGAGTTGCGGAGgtaattgtca ... tgttgtgcagTTGAATGAGACTACGTT-GGAAAAAGCGTTAGACCTGGTGCACAGTAGCAA
EST: CTCGAGTTGCGGAG TTGAATGAGACTACGTTGGAAAAAGCGTTAGACCTGGTGCACAGTAGCAATEST: gi|100409654|gb|BY956039.1|BY956039
genomic: CTCGAGTTGCGGAGgtaattgtca ... tgttgtgcagTTGAATGAGACTACGTTGGAAAAAGCGTTAGACCTGGTGCACAGTAGCAAT
EST: AGCACAATCATGCTGCCTCTGACCAGCCACTATCCGCTCGAGTTGCGGAG TTGAATGAGACTACGTTGGAAAAAGCGTTAGACCTGGTGCACAGTAGCAAT
genomic: AGCACAATCATGCTGCCTCTGACCAGCCACTATCCGCTCGAGTTGCGGAGgtaattgtca ... tgttgtgcagTTGAATGAGACTACGTTGGAAAAAGCGTTAGACCTGGTGCACAGTAGCAAT
tatttgatgtgtggattctattttgcactgattgtcgtgtacatttgttgtgcagTTGAATGAGACTACGTTGGAAAAAGCGTTAGACCTGGTGCACAGTAGCAATGGGACGTACATGGCAGTGCTCCATTATGCAACGTGGTGCCCTTTTTCGA
cactgat putative branch site (score: 12)
attctatttt TA-rich tract