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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCTTGGCAACTGTGTCTCACGAGATTCGGACTCCAATGAATGGTGTTCTAGgttagtataatatatccacaacacttgaatttcatactttgttatttctaagtagaattgtgcgcatattgtctgcttatgtacatctctgtgatgcag

Basic information

species Physcomitrella patens
transcript PP1S50_141V6.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S50_141V6.1 (Physcomitrella patens), 5'ss of exon 7
lower sequence: LOC_Os01g69920.2 (Oryza sativa), 5'ss of exon 5
TTCTTGGCAACTGTGTCTCACGAGATTCGGACTCCAATGAATGGTGTTCTAGgttagtataatatatccac-----aacacttga-atttcatactttgttatt---tctaagtagaattgtgcgcatattgtctgcttatgtacatctctgtgatgcag
|||||||| ||||| || || |||||  | ||||||||||||||||||||||||||||  | |   | |       || | |||   ||| |  |||||  ||    ||||| |  | || |  |   |||      ||   | |  ||   |       
TTCTTGGCTACTGTTTCACATGAGATCAGAACTCCAATGAATGGTGTTCTAGgttagtccactgccttcgtttcaaaataattgttgttttaggctttggcatcaactctaactt-acttctatgagcattaatattttggtttcgccttgat-------

upper sequence: PP1S50_141V6.1 (Physcomitrella patens), 5'ss of exon 7
lower sequence: LOC_Os10g21810.1 (Oryza sativa), 5'ss of exon 8
TTCTTGGCAACTGTGTCTCACGAGATTCGGACTCCAATGAATGGTGTTCTAGgttagt-----ataatatatccacaacacttgaatttcat-actttgttat-ttctaagt---------agaattgtgc-gcatattgtctgcttatgtacatctctgtgatgcag
||  | |||||||| || || |||||| | ||||||||||||||||| ||||||| ||     ||| | | |    ||   ||   ||  || || ||| ||  ||||   |         |  |   |||   ||    | ||    || |  |||   |||  |||
TTTCTAGCAACTGTTTCACATGAGATTAGAACTCCAATGAATGGTGTACTAGgtttgtcctttatactttgtttttaattattcttttctatcacattgataccttctgtattatcgtcagaagacaatgctaaatgagttatgagagtggatttctacctgaaccag

upper sequence: PP1S50_141V6.1 (Physcomitrella patens), 5'ss of exon 7
lower sequence: GRMZM2G158252_T01 (Zea mays), 5'ss of exon 8
TTCTTGGCAACTGTGTCTCACGAGATTCGGACTCCAATGAATGGTGTTCTAGgttagta----taatatatccacaacacttga-atttcatact-ttgttatttctaagtag-----aattgtgcgcatattgtctgcttatgtaca-----tctctgtgatgcag
||  | |||||||| || || ||||||||||||||||||||||||||| |||||  |||    | |||| ||         |   | | |||||    ||||||| |   ||      |||      ||  |       || || | |     |||   |||   ||
TTTCTAGCAACTGTTTCCCATGAGATTCGGACTCCAATGAATGGTGTTTTAGgtctgtacttctgatatttcttttttgtctattaatacataccgcagttatttgtgtttatgttttaatcaaagacaactaaataaattttgaaaaggatttcttcttgaattag

upper sequence: PP1S50_141V6.1 (Physcomitrella patens), 5'ss of exon 7
lower sequence: GRMZM2G423456_T02 (Zea mays), 5'ss of exon 6
TTCTTGGCAACTGTGTCTCACGAGATTCGGACTCCAATGAATGGTGTTCTAGgttag--tataatatatccacaacacttgaatttcatactttgttatttctaagtagaattgtgcgcatattgtctgcttatgtacatctctgtgatgcag
|||||||| ||||| ||||| |||||  | |||||||||||||||||||||||| ||  | || |  ||| | |       |   || || || |||| ||   |||  ||            | || | || || |                
TTCTTGGCTACTGTTTCTCATGAGATCAGAACTCCAATGAATGGTGTTCTAGgtgaggttctagtccatctaaactgtacaataatcttaatt-gttaatta-gagtgaaaggagatatgatgtttccgattttgcag---------------

upper sequence: PP1S50_141V6.1 (Physcomitrella patens), 5'ss of exon 7
lower sequence: GRMZM2G471529_T01 (Zea mays), 5'ss of exon 6
TTCTTGGCAACTGTGTCTCACGAGATTCGGACTCCAATGAATGGTGTTCTAGgttag--tataatatatccacaacacttgaatttcatactttgttatttctaa-gtagaattgtgcgcatattgtctgcttatgtacatctctgtgatgcag
|||||||| ||||| ||||| |||||  | ||||||||||||||||| |||||| ||  | |||| |||| | ||   |  |||    | | |||||| ||     | |      |  | || ||  |   || || |                
TTCTTGGCTACTGTTTCTCATGAGATCAGAACTCCAATGAATGGTGTCCTAGgtgaggttctaatgtatcta-aattgtacaataattttcattgttaattagggcgaaaggagatatgaatgtttccaatttttgcag---------------

upper sequence: PP1S50_141V6.1 (Physcomitrella patens), 5'ss of exon 7
lower sequence: AT1G27320.1 (Arabidopsis thaliana), 5'ss of exon 6
TTCTTGGCAACTGTGTCTCACGAGATTCGGACTCCAATGAATGGTGTTCTAGgttagtat-aatatatccacaa---cacttgaatttcatactt-tgt-------tatttct----aagtagaattgtgcgcatattgtc-tgcttatgtacatctctgtgatgcag
||| | || ||||| || || || ||  | |||||||||||||||||||||||| |||||  | ||  |||| |     | |   | ||  || | ||        |||||       |  | | ||   |  ||||| || || | |  |  ||||  | | || ||
TTCCTTGCCACTGTTTCACATGAAATCAGAACTCCAATGAATGGTGTTCTAGgtgagtatcgaaatggccactatgttgcctccttctctcacctatgcccatgaatattttctgaagaacaaacttaaccaaatattctcatgttgactttgatct--ggggtgtag