1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtatttgatattaagcattttatacaactcttatgtgttatcggatccttaatcatgttagttgtgatttgtattctctgacgtgcgtaaacttccccagagaaagttttatcattacatttttaatagtgttgcgctgccaacttttacgaagggaatattattggatgtggtctaaaacagGGGATTCAGTATCTCAGGAAGATGTGCGGAAACTTATTAAGGAAGTGGACGAGTTCGTACTTGCAAGCCACCTGCACTGGGCTCTTTGGGGCTTATTGTC
species | Physcomitrella patens |
transcript | PP1S50_118V6.3 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: ACTATGAAGAGCGGAGCCAATTCTGCCGTGCATATCTAGAAG---C-- ----TTCAGTATCTCAGGAAGATGTGCGGAAACTTATTAAGGAAGTGGACGEST: gi|162170655|gb|FC347151.1|FC347151
genomic: ACTATGAAGAGCGGAGCCAATTCTGCCGTGCATATCTAGAAGCTTCAGgtatttgata ... tctaaaacagGGGATTCAGTATCTCAGGAAGATGTGCGGAAACTTATTAAGGAAGTGGACG
EST: ACTATGAAGAGCGGAGCCAATTCTGCCGTGCATATCTAGAAGCTTCAG GGGATTCAGTATCTCAGGAAGATGTGCGGAAACTTATTAAGGAAGTGGACGEST: gi|67695099|gb|BJ955332.1|BJ955332
genomic: ACTATGAAGAGCGGAGCCAATTCTGCCGTGCATATCTAGAAGCTTCAGgtatttgata ... tctaaaacagGGGATTCAGTATCTCAGGAAGATGTGCGGAAACTTATTAAGGAAGTGGACG
EST: ACTATGAAGAGCGGAGCCAATTCTGCCGTGCATATCTAGAAGCTTCAG GGGATTCAGTATCTCAGGAAGATGTGCGGAAACTTATTAAGGAAGTGGACGEST: gi|37850877|gb|BJ608885.1|BJ608885
genomic: ACTATGAAGAGCGGAGCCAATTCTGCCGTGCATATCTAGAAGCTTCAGgtatttgata ... tctaaaacagGGGATTCAGTATCTCAGGAAGATGTGCGGAAACTTATTAAGGAAGTGGACG
EST: ACTATGAAGAGCGGAGCCAATTCTGCCGTGCATATCTAGAAGCTTCAG GGGATTCAGTATCTCAGGAAGATGTGCGGAAACTTATTAAGGAAGTGGACGEST: gi|162170654|gb|FC347150.1|FC347150
genomic: ACTATGAAGAGCGGAGCCAATTCTGCCGTGCATATCTAGAAGCTTCAGgtatttgata ... tctaaaacagGGGATTCAGTATCTCAGGAAGATGTGCGGAAACTTATTAAGGAAGTGGACG
EST: ACTATGAAGAGCGGAGCCAATTCTGCCGTGCATATCTAGAAGCTTCAG GGGATTCAGTATCTCAGGAAGATGTGCGGAAACTTATTAAGGAAGTGGACGEST: gi|208386046|gb|DC956562.1|DC956562
genomic: ACTATGAAGAGCGGAGCCAATTCTGCCGTGCATATCTAGAAGCTTCAGgtatttgata ... tctaaaacagGGGATTCAGTATCTCAGGAAGATGTGCGGAAACTTATTAAGGAAGTGGACG
EST: ACTATGAAGAGCGGAGCCAATTCTGCCGTGCATATCTAGAAGCTTCAG GGGATTCAGTATCTCAGGAAGATGTGCGGAAACTTATTAAGGAAGTGGACG
genomic: ACTATGAAGAGCGGAGCCAATTCTGCCGTGCATATCTAGAAGCTTCAGgtatttgata ... tctaaaacagGGGATTCAGTATCTCAGGAAGATGTGCGGAAACTTATTAAGGAAGTGGACG
gtgttgcgctgccaacttttacgaagggaatattattggatgtggtctaaaacagGGGATTCAGTATCTCAGGAAGATGTGCGGAAACTTATTAAGGAAGTGGACGAGTTCGTACTTGCAAGCCACCTGCACTGGGCTCTTTGGGGCTTATTGTC
gtctaaa putative branch site (score: 5)
aatattatt TA-rich tract