1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
gtgagcaatacgtgacttcaggaatctcatctgaaattgttgtgaagattcataatgcacaattactatgtctgattataatttttacacagttggggtctatccatcacgagagttgatttctaatggatagtatactctggcagGTCTGACAGTGCCCTGAAGTTCGGTTGGTTCTTCCTCTTCTATTGT
species | Physcomitrella patens |
transcript | PP1S50_114V6.3 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: AATCCTGGTTCTTACTTCTTGTGGTATAGGCCACTTTATCGTGCGATGAG GTCTGACAGTGCCCTGAAGTTCGGTTGGTTCTTCCTCTTCTATTGTEST: gi|67701518|gb|BJ961751.1|BJ961751
genomic: TATCCTGGTTCTTACTTCTTGTGGTATAGGCCACTTTATCGTGCGATGAGgtgagcaata ... actctggcagGTCTGACAGTGCCCTGAAGTTCGGTTGGTTCTTCCTCTTCTATTGT
EST: TATCCTGGTTCTTACTTCTTGTGGTATAGGCCACTTTATCGTGCGATGAG GTCTGACAGTGCCCTGAAGTTCGGTTGGTTCTTCCTCTTCTATTGTEST: gi|208394706|gb|DC903962.1|DC903962
genomic: TATCCTGGTTCTTACTTCTTGTGGTATAGGCCACTTTATCGTGCGATGAGgtgagcaata ... actctggcagGTCTGACAGTGCCCTGAAGTTCGGTTGGTTCTTCCTCTTCTATTGT
EST: AATCCTGGTTCTTACTTCTTGTGGTATAGGCCACTTTATCGTGCGATGAG GTCTGACAGTGCCCTGAAGTTCGGTTGGTTCTTCCTCTTCTATTGTEST: gi|67695428|gb|BJ955661.1|BJ955661
genomic: TATCCTGGTTCTTACTTCTTGTGGTATAGGCCACTTTATCGTGCGATGAGgtgagcaata ... actctggcagGTCTGACAGTGCCCTGAAGTTCGGTTGGTTCTTCCTCTTCTATTGT
EST: TATCCTGGTTCTTACTTCTTGTGGTATAGGCCACTTTATCGTGCGATGAG GTCTGACAGTGCCCTGAAGTTCGGTTGGTTCTTCCTCTTCTATTGTEST: gi|208380999|gb|DC919881.1|DC919881
genomic: TATCCTGGTTCTTACTTCTTGTGGTATAGGCCACTTTATCGTGCGATGAGgtgagcaata ... actctggcagGTCTGACAGTGCCCTGAAGTTCGGTTGGTTCTTCCTCTTCTATTGT
EST: TATCCTGGTTCTTACTTCTTGTGGTATAGGCCACTTTATCGTGCGATGAG GTCTGACAGTGCCCTGAAGTTCGGTTGGTTCTTCCTCTTCTATTGTEST: gi|208375107|gb|DC944846.1|DC944846
genomic: TATCCTGGTTCTTACTTCTTGTGGTATAGGCCACTTTATCGTGCGATGAGgtgagcaata ... actctggcagGTCTGACAGTGCCCTGAAGTTCGGTTGGTTCTTCCTCTTCTATTGT
EST: TATCCTGGTTCTTACTTCTTGTGGTATAGGCCACTTTATCGTGCGATGAG GTCTGACAGTGCCCTGAAGTTCGGTTGGTTCTTCCTCTTCTATTGTEST: gi|162258284|gb|FC434683.1|FC434683
genomic: TATCCTGGTTCTTACTTCTTGTGGTATAGGCCACTTTATCGTGCGATGAGgtgagcaata ... actctggcagGTCTGACAGTGCCCTGAAGTTCGGTTGGTTCTTCCTCTTCTATTGT
EST: TATCCTGGTTCTTACTTCTTGTGGTATAGGCCACTTTATCGTGCGATGAG GTCTGACAGTGCCCTGAAGTTCGGTTGGTTCTTCCTCTTCTATTGT
genomic: TATCCTGGTTCTTACTTCTTGTGGTATAGGCCACTTTATCGTGCGATGAGgtgagcaata ... actctggcagGTCTGACAGTGCCCTGAAGTTCGGTTGGTTCTTCCTCTTCTATTGT
gttggggtctatccatcacgagagttgatttctaatggatagtatactctggcagGTCTGACAGTGCCCTGAAGTTCGGTTGGTTCTTCCTCTTCTATTGT
ttctaat putative branch site (score: 2)
atttctaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagcaatacgtgacttcaggaatctcatctgaaattgttgtgaagattcataatgcacaattactatgtctgattataatttttacacagttggggtctatccatcacgagagttgatttctaatggatagtatactctggcagGTCTGACAGTGCCCTGAAGTTCGGTTGGTTCTTCCTCTTCTATTGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG