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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgggttccatcatcccgttccctgaattcaaaagttgaggtctgttccagggtatccattgtgcacattcaaggatatgacctctgctcgaagttaatcctaatggttttcactggaaattgtgcagCTCGTGGAGCCTGATGTGCCACCCAGCCGACGCAAGAAGCCCAAGCGTCCCCCGCCTCCGATCTTCTTCGCAGAACCGGTCACGCCTTCCAACTCTTTCG

Basic information

species Physcomitrella patens
transcript PP1S509_6V6.1
intron # 14
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162263642|gb|FC438878.1|FC438878
EST:     TACAGTTGACGGACTTTGATCTATCCTTCTTAACCTCTGCAAAGCCTCTG                         CTCGTGGAGCCTGATGTGCCACCCAGCCGACGCAAGAAGCCCAAGCGTCCC
genomic: TACAGTTGACGGACTTTGATCTATCCTTCTTAACCTCTGCAAAGCCTCTGgtgggttcca ... aattgtgcagCTCGTGGAGCCTGATGTGCCACCCAGCCGACGCAAGAAGCCCAAGCGTCCC
EST: gi|162162161|gb|FC337735.1|FC337735
EST:     TACAGTTGACGGACTTTGATCTATCCTTCTTAACCTCTGCAAAGCCTCTG                         CTCGTGGAGCCTGATGTGCCACCCAGCCGACGCAAGAAGCCCAAGCGTCCC
genomic: TACAGTTGACGGACTTTGATCTATCCTTCTTAACCTCTGCAAAGCCTCTGgtgggttcca ... aattgtgcagCTCGTGGAGCCTGATGTGCCACCCAGCCGACGCAAGAAGCCCAAGCGTCCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggatatgacctctgctcgaagttaatcctaatggttttcactggaaattgtgcagCTCGTGGAGCCTGATGTGCCACCCAGCCGACGCAAGAAGCCCAAGCGTCCCCCGCCTCCGATCTTCTTCGCAGAACCGGTCACGCCTTCCAACTCTTTCG
                         tcctaat  putative branch site (score: 2)
                  aagttaat  TA-rich tract