Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|18373411|gb|BJ204989.1|BJ204989EST: CTCGGTGGTCTGAAGCATGCTTGGGCAGAATTAACTGAGAGCAAGTTAAG ATTTGAGAACTGAAACATAATCATGAGCATGGAAAAGTCACCGCCTCCACA
genomic: CTCGGTGGTCTGAAGCATGCTTGGGCAGAATTAACTGAGAGCAAGTTAAGgttggtacac ... tattgcgcagATTTGAGAACTGAAACATAATCATGAGCATGGAAAAGTCACCGCCTCCACA
EST:
gi|18375060|gb|BJ206638.1|BJ206638EST: CTCGGTGGTCTGAAGCATGCTTGGGCAGAATTAACTGAGAGCAAGTTAAG ATTTGAGAACTGAAACATAATCATGAGCATGGAAAAGTCACCGCCT
genomic: CTCGGTGGTCTGAAGCATGCTTGGGCAGAATTAACTGAGAGCAAGTTAAGgttggtacac ... tattgcgcagATTTGAGAACTGAAACATAATCATGAGCATGGAAAAGTCACCGCCT
EST:
gi|18361409|gb|BJ193475.1|BJ193475EST: CTCGGTGGTCTGAAGCATGCTTGGGCAGAATTAACTGAGAGCAAGTTAAG ATTTGAGAACTGAAACATAATCATGAGCATGGAAA
genomic: CTCGGTGGTCTGAAGCATGCTTGGGCAGAATTAACTGAGAGCAAGTTAAGgttggtacac ... tattgcgcagATTTGAGAACTGAAACATAATCATGAGCATGGAAA
EST:
gi|67508029|gb|BJ940902.1|BJ940902EST: CTCGGTGGTCTGAAGCATGCTTGGGCAGAATTAACTGAGAGCAAGTTAAG ATTTGAGAACTGAAACATAATCATGAGCATGGAAAAGTCACCGCCTCCACA
genomic: CTCGGTGGTCTGAAGCATGCTTGGGCAGAATTAACTGAGAGCAAGTTAAGgttggtacac ... tattgcgcagATTTGAGAACTGAAACATAATCATGAGCATGGAAAAGTCACCGCCTCCACA
EST:
gi|100395974|gb|BY972220.1|BY972220EST: CTCGGTGGTCTGAAGCATGCTTGGGCAGAATTAACTGAGAGCAAGTTAAG ATTTGAGAACTGAAACATAATCATGAGCATGGAAAAGTCACCGCCTCCACA
genomic: CTCGGTGGTCTGAAGCATGCTTGGGCAGAATTAACTGAGAGCAAGTTAAGgttggtacac ... tattgcgcagATTTGAGAACTGAAACATAATCATGAGCATGGAAAAGTCACCGCCTCCACA
EST:
gi|18365013|gb|BJ197087.1|BJ197087EST: CTCGGTGGTCTGAAGCATGCTTGGGCAGAATTAACTGAGAGCAAGTTAAG ATTTGAGAACTGAAACATAATCATGAGCATGGAAAAGTCACCGCCTCCACA
genomic: CTCGGTGGTCTGAAGCATGCTTGGGCAGAATTAACTGAGAGCAAGTTAAGgttggtacac ... tattgcgcagATTTGAGAACTGAAACATAATCATGAGCATGGAAAAGTCACCGCCTCCACA
EST:
gi|162186034|gb|FC361862.1|FC361862EST: CTCGGTGGTCTGAAGCATGCTTGGGCAGAATTAACTGAGAGCAAGTTAAG ATTTGAGAACTGAAACATAATCATGAGCATGGAAAAGTCACCGCCTCCACA
genomic: CTCGGTGGTCTGAAGCATGCTTGGGCAGAATTAACTGAGAGCAAGTTAAGgttggtacac ... tattgcgcagATTTGAGAACTGAAACATAATCATGAGCATGGAAAAGTCACCGCCTCCACA
EST:
gi|162154406|gb|FC330213.1|FC330213EST: CTCGGTGGTCTGAAGCATGCTTGGGCAGAATTAACTGAGAGCAAGTTAAG ATTTGAGAACTGAAACATAATCATGAGCATGGAAAAGTCACCGCCTCCACA
genomic: CTCGGTGGTCTGAAGCATGCTTGGGCAGAATTAACTGAGAGCAAGTTAAGgttggtacac ... tattgcgcagATTTGAGAACTGAAACATAATCATGAGCATGGAAAAGTCACCGCCTCCACA
EST:
gi|100418265|gb|BY993414.1|BY993414EST: CTCGGTGGTCTGAAGCATGCTTGGGCAGAATTAACTGAGAGCAAGTTAAG ATTTGAGAACTGAAACATAATCATGAGCATGGAAAAGTCACCGCCTCCACA
genomic: CTCGGTGGTCTGAAGCATGCTTGGGCAGAATTAACTGAGAGCAAGTTAAGgttggtacac ... tattgcgcagATTTGAGAACTGAAACATAATCATGAGCATGGAAAAGTCACCGCCTCCACA
EST:
gi|67578002|gb|BJ950169.1|BJ950169EST: CTCGGTGGTCTGAAGCATGCTTGGGCAGAATTAACTGAGAGCAAGTTAAG ATTTGAGAACTGAAACATAATCATGAGCATGGAAAAGTCACCGCCTCCACA
genomic: CTCGGTGGTCTGAAGCATGCTTGGGCAGAATTAACTGAGAGCAAGTTAAGgttggtacac ... tattgcgcagATTTGAGAACTGAAACATAATCATGAGCATGGAAAAGTCACCGCCTCCACA
EST:
gi|100413530|gb|BY956714.1|BY956714EST: CTCGGTGGTCTGAAGCATGCTTGGGCAGAATTAACTGAGAGCAAGTTTAG ATTTGAGAACTGAAACATAATCATGAGCATGGAAAAGTCACCGCCTCCACA
genomic: CTCGGTGGTCTGAAGCATGCTTGGGCAGAATTAACTGAGAGCAAGTTAAGgttggtacac ... tattgcgcagATTTGAGAACTGAAACATAATCATGAGCATGGAAAAGTCACCGCCTCCACA
EST:
gi|18355922|gb|BJ187981.1|BJ187981EST: CTCGGTGGTCTGAAGCATGCTTGGGCAGAATTAACTGAGAGCAAGTTAAG ATTTGAGAACTGAAACATAATCATGAGCATGGAAAAGTCACCGCCTCCACA
genomic: CTCGGTGGTCTGAAGCATGCTTGGGCAGAATTAACTGAGAGCAAGTTAAGgttggtacac ... tattgcgcagATTTGAGAACTGAAACATAATCATGAGCATGGAAAAGTCACCGCCTCCACA
EST:
gi|18352419|gb|BJ184473.1|BJ184473EST: CTCGGTGGTCTGAAGCATGCTTGGGCAGAATTAACTGAGAGCAAGTTAAG ATTTGAGAACTGAAACATAATCATGAGCATGGAAAAGTCACCGCCTCCACA
genomic: CTCGGTGGTCTGAAGCATGCTTGGGCAGAATTAACTGAGAGCAAGTTAAGgttggtacac ... tattgcgcagATTTGAGAACTGAAACATAATCATGAGCATGGAAAAGTCACCGCCTCCACA
EST:
gi|18373702|gb|BJ205280.1|BJ205280EST: CTCGGTGGTCTGAAGCATGCTTGGGCAGAATTAACTGAGAGCAAGTTAAG ATTTGAGAACTGAAACATAATCATGAGCATGGAAAAGTCACCGCCTCCACA
genomic: CTCGGTGGTCTGAAGCATGCTTGGGCAGAATTAACTGAGAGCAAGTTAAGgttggtacac ... tattgcgcagATTTGAGAACTGAAACATAATCATGAGCATGGAAAAGTCACCGCCTCCACA
EST:
gi|18375275|gb|BJ206853.1|BJ206853EST: CTCGGTGGTCTGAAGCATGCTTGGGCAGAATTAACTGAGAGCAAGTTAAG ATTTGAGAACTGAAACATAATCATGAGCATGGAAAAGTCACCGCCTCCACA
genomic: CTCGGTGGTCTGAAGCATGCTTGGGCAGAATTAACTGAGAGCAAGTTAAGgttggtacac ... tattgcgcagATTTGAGAACTGAAACATAATCATGAGCATGGAAAAGTCACCGCCTCCACA
EST:
gi|18372219|gb|BJ203821.1|BJ203821EST: CTCGGTGGTCTGAAGCATGCTTGGGCAGAATTAACTGAGAGCAAGTTAAG ATTTGAGAACTGAAACATAATCATGAGCATGGAAAAGTCACCG
genomic: CTCGGTGGTCTGAAGCATGCTTGGGCAGAATTAACTGAGAGCAAGTTAAGgttggtacac ... tattgcgcagATTTGAGAACTGAAACATAATCATGAGCATGGAAAAGTCACCG
EST:
gi|208361322|gb|DC930347.1|DC930347EST: CTCGGTGGTCTGAAGCATGCTTGGGCAGAATTAACTGAGAGCAAGTTAAG ATTTGAGAACTGAAACATAATCATGAGCATAGAAAAGTCACCGCCTCCACA
genomic: CTCGGTGGTCTGAAGCATGCTTGGGCAGAATTAACTGAGAGCAAGTTAAGgttggtacac ... tattgcgcagATTTGAGAACTGAAACATAATCATGAGCATGGAAAAGTCACCGCCTCCACA
RNA-Seq data
ATGC Supported by RNA-Seq exonic block that spans over the splice site
atgs Truncated intron sequence
Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.
Found data for 1 RNA-Seqlibrary.
Block sizes:
16 (upstream exon),
29 (downstream exon)
Score:
4ATCGTTGTTAGTAATTTTTTTGAAGGTCCTTGTGCACCTTCAGGGGAATTCTCGGTGGTCTGAAGCATGCTTGGGCAGAATTAACTGAGAGCAAGTTAAGgttggtacac ... tattgcgcagATTTGAGAACTGAAACATAATCATGAGCATGGAAAAGTCACCGCCTCCACACAATGGCAATTACCCTTCATATTACGCTCCGCCGCGGAAGCATGAGAAG
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