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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACCGTTGTATTCAGAAGTCCTCTCCCACATAGACACATCGCTAAACCTCCAATAGGTGTTGTTTTCCCCAAAAAGgtatgattggaacttcatctcgttaatttatttctgttggtatccttgcaaatgacccactggtgtctttgggatctccttacctttggtttccaagctttatttacagttttattcttcatgggatccgtttcaatgatgtgatgtgattgttcaaatgcag

Basic information

species Physcomitrella patens
transcript PP1S509_20V6.1
intron # 20
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22491651|gb|BU051574.1|BU051574
EST:     CACATAGACACATCGCTAAACCTCCAATAGGTGTTGTTTTCCCCAAAAAG                         ACCATTACGGAACAGGATGTAAAGCTACAGCCCTTGTGGCATGAAGATCAT
genomic: CACATAGACACATCGCTAAACCTCCAATAGGTGTTGTTTTCCCCAAAAAGgtatgattgg ... tcaaatgcagACCATTACGGAACAGGATGTAAAGCTACAGCCCTTGTGGCATGAAGATCAT
EST: gi|162179657|gb|FC355715.1|FC355715
EST:     CACATAGACACATCGCTGAACCTCCAATAGGTGTTGTTTTCCCCAAAAAG                         ACCATTACGGAACAGGATGTAAAGCTACAGCCCTTGTGGCATGAAGATCAT
genomic: CACATAGACACATCGCTAAACCTCCAATAGGTGTTGTTTTCCCCAAAAAGgtatgattgg ... tcaaatgcagACCATTACGGAACAGGATGTAAAGCTACAGCCCTTGTGGCATGAAGATCAT
EST: gi|162230229|gb|FC406585.1|FC406585
EST:     CACATAGACACATCGCTAAACCTCCAATAGGTGTTGTTTTCCCCAAAAAG                         ACCATTACGGAACAGGATGTAAAGCTACAGCCCTTGTGGCATGAAGATCAT
genomic: CACATAGACACATCGCTAAACCTCCAATAGGTGTTGTTTTCCCCAAAAAGgtatgattgg ... tcaaatgcagACCATTACGGAACAGGATGTAAAGCTACAGCCCTTGTGGCATGAAGATCAT
EST: gi|162173081|gb|FC348680.1|FC348680
EST:     CACATAGACACATCGCTAAACCTCCAATAGGTGTTGTTTTCCCCAAAAAG                         ACCATTACGGAACAGGATGTAAAGCTACAGCCCTTGTGGCATGAAGATCAT
genomic: CACATAGACACATCGCTAAACCTCCAATAGGTGTTGTTTTCCCCAAAAAGgtatgattgg ... tcaaatgcagACCATTACGGAACAGGATGTAAAGCTACAGCCCTTGTGGCATGAAGATCAT