Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|67724152|gb|BJ974411.1|BJ974411EST: TACCAGAACTGGCGGACGGTTACCATTTAGGTGACATCGGCTCCTCCAAG GCTGACATGAACAACCTTGGTGGCTGCGACTGGATGGCGGATTTGAGCATG
genomic: TACCAGAACTGGCGGACGGTTACCATTTAGGTGACATCGGCTCCTCCAAGgtacacatat ... ttgtctgcagGCTGACATGAACAACCTTGGTGACTGCGACTGGATGGCGGATTTGAGCATG
EST:
gi|208348747|gb|DC926422.1|DC926422EST: TACCAGAACTGGCGGACGGTTACCATTTAGGTGACATCGGCTCCTCCAAG GCTGACATGAACAACCTTGGTGACTGCGACTGGATGGCGGATTTGAGCATG
genomic: TACCAGAACTGGCGGACGGTTACCATTTAGGTGACATCGGCTCCTCCAAGgtacacatat ... ttgtctgcagGCTGACATGAACAACCTTGGTGACTGCGACTGGATGGCGGATTTGAGCATG
EST:
gi|37846355|gb|BJ604363.1|BJ604363EST: TACCAGAACTGGCGGACGGTTACCATTTAGGTGACATCGGCTCCTCCAAG GCTGACATGAACAACCTTGGTGACTGCGACTGGATGGCGGATTTGAGCATG
genomic: TACCAGAACTGGCGGACGGTTACCATTTAGGTGACATCGGCTCCTCCAAGgtacacatat ... ttgtctgcagGCTGACATGAACAACCTTGGTGACTGCGACTGGATGGCGGATTTGAGCATG
EST:
gi|67692834|gb|BJ953067.1|BJ953067EST: TACCAGAACTGGCGGACGGTTACCATTTAGGTGACATCGGCTCCTCCAAG GCTGACATGAACAACCTTGGTGACTGCGACTGGATGGCGGATTTGAGCATG
genomic: TACCAGAACTGGCGGACGGTTACCATTTAGGTGACATCGGCTCCTCCAAGgtacacatat ... ttgtctgcagGCTGACATGAACAACCTTGGTGACTGCGACTGGATGGCGGATTTGAGCATG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.taatattcttaatctaaaaaattagtattctagcaaatgctcactttgtctgcagGCTGACATGAACAACCTTGGTGACTGCGACTGGATGGCGGATTTGAGCATGTTTGAAGAGCAAATTTACGCCGAGACGTTGCGCAAGGTTCCTCAGATGT
tgctcac putative branch site (score: 2)
ctcacttt CT-rich tract
ttcttaatctaaaaaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
cttattctaaaaaaatcactataatattattgtattattacagtgtaatattcttaatctaaaaaattagtattctagcaaatgctcactttgtctgcagGCTGACATGAACAACCTTGGTGACTGCGACTGGATGGCGGATTTGAGCATGTTTGAAGAGCAAATTTACGCCGAGACGTTGCGCAAGGTTCCTCAGATGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG