1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...ttgagctaaatatgcgtatgatattctgtgttttactattcttttattagtttgtacatcttggggtttcttatcacttctttcaccgattattctgcagGTGTATGTCCTGGTTGGAGCATGGCACACTTCCCCCTCTAACCTACGAACGAGAAAGTCGACGATGGAGGGTTAGAATAAGGGTCTGGTTACATCCCGTC
species | Physcomitrella patens |
transcript | PP1S507_8V6.4 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TCGCGGGGCCGTGTCTGGTTTGTGGACGCGGAGCTGTTCGCTGTGAGTTG GTGTATGTCCTGGTTGGAGCATGGCACACTTCCCCCTCTAACCTACGAACGEST: gi|18349258|gb|BJ181307.1|BJ181307
genomic: TCGCGGGGCCGTGTCTGGTTTGTGGACGCGGAGCTGTTCGCTGTGAGTTGgtcggtttgt ... tattctgcagGTGTATGTCCTGGTTGGAGCATGGCACACTTCCCCCTCTAACCTACGAACG
EST: TCGCGGGGCCGTGTCTGGTTTGTGGACGCGGAGCTGTTCGC-------T- GTGTATGTCCTGGTTGGAGCATGGCACACTTCCCCCTCTAACCTACGAACGEST: gi|18372056|gb|BJ203658.1|BJ203658
genomic: TCGCGGGGCCGTGTCTGGTTTGTGGACGCGGAGCTGTTCGCTGTGAGTTGgtcggtttgt ... tattctgcagGTGTATGTCCTGGTTGGAGCATGGCACACTTCCCCCTCTAACCTACGAACG
EST: TCGCGGGGCCGTGTCTGGTTTGTGGACGCGGAGCTGTTCGCTGTGAGTTG GTGTATGTCCTGGTTGGAGCATGGCACACTTCCCCCTCTAACCTACGAACGEST: gi|100387980|gb|BY970725.1|BY970725
genomic: TCGCGGGGCCGTGTCTGGTTTGTGGACGCGGAGCTGTTCGCTGTGAGTTGgtcggtttgt ... tattctgcagGTGTATGTCCTGGTTGGAGCATGGCACACTTCCCCCTCTAACCTACGAACG
EST: TCGCGGGGCCGTGTCTGGTTTGTGGACGCGGAGCTGTTCGCTGTGAGTTG GTGTATGTCCTGGTTGGAGCATGGCACACTTCCCCCTCTAACCTACGAACGEST: gi|18325028|gb|BJ157024.1|BJ157024
genomic: TCGCGGGGCCGTGTCTGGTTTGTGGACGCGGAGCTGTTCGCTGTGAGTTGgtcggtttgt ... tattctgcagGTGTATGTCCTGGTTGGAGCATGGCACACTTCCCCCTCTAACCTACGAACG
EST: TCGCGGGGCCGTGTCTGGTTTGTGGACGCGGAGCTGTTCGC-------T- GTGTATGTCCTGGTTGGAGCATGGCACACTTCCCCCTCTAACCTACGAACG
genomic: TCGCGGGGCCGTGTCTGGTTTGTGGACGCGGAGCTGTTCGCTGTGAGTTGgtcggtttgt ... tattctgcagGTGTATGTCCTGGTTGGAGCATGGCACACTTCCCCCTCTAACCTACGAACG
attagtttgtacatcttggggtttcttatcacttctttcaccgattattctgcagGTGTATGTCCTGGTTGGAGCATGGCACACTTCCCCCTCTAACCTACGAACGAGAAAGTCGACGATGGAGGGTTAGAATAAGGGTCTGGTTACATCCCGTC
ttattct CT-rich tract
tttcttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgagctaaatatgcgtatgatattctgtgttttactattcttttattagtttgtacatcttggggtttcttatcacttctttcaccgattattctgcagGTGTATGTCCTGGTTGGAGCATGGCACACTTCCCCCTCTAACCTACGAACGAGAAAGTCGACGATGGAGGGTTAGAATAAGGGTCTGGTTACATCCCGTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG