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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCGTGGTTGCGGAGCTCGGACCTCGGCGAGGCGACGCGCTGAAGCTTTGCCTCGTCTTTCGCGGGGCCGTGTCTGGTTTGTGGACGCGGAGCTGTTCGCTgtgagttggtcggtttgtctttcgctcgctcggtcgtttggttcttcgtctcgtttcaccaggagagaatgctgcggtgttgcagtggcgttgggcgagt...

Basic information

species Physcomitrella patens
transcript PP1S507_8V6.3
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18325028|gb|BJ157024.1|BJ157024
EST:     CTCGTCTTTCGCGGGGCCGTGTCTGGTTTGTGGACGCGGAGCTGTTCGCT                         GTGTATGTCCTGGTTGGAGCATGGCACACTTCCCCCTCTAACCTACGAACG
genomic: CTCGTCTTTCGCGGGGCCGTGTCTGGTTTGTGGACGCGGAGCTGTTCGCTgtgagttggt ... tattctgcagGTGTATGTCCTGGTTGGAGCATGGCACACTTCCCCCTCTAACCTACGAACG
EST: gi|18358876|gb|BJ190935.1|BJ190935
EST:     CTCGTCTTTCGCGGGGCCGTGTCTGGTTTGTGGACGCGGAGCTGTTCGCTGTGAGTT                   
genomic: CTCGTCTTTCGCGGGGCCGTGTCTGGTTTGTGGACGCGGAGCTGTTCGC-------Tgtgagttggt ... tatt
EST: gi|18358876|gb|BJ190935.1|BJ190935
EST:     CTCGTCTTTCGCGGGGCCGTGTCTGGTTTGTGGACGCGGAGCTGTTCGCTGTGAGTT                   
genomic: CTCGTCTTTCGCGGGGCCGTGTCTGGTTTGTGGACGCGGAGCTGTTCGC-------Tgtgagttggt ... tatt
EST: gi|18349258|gb|BJ181307.1|BJ181307
EST:     CTCGTCTTTCGCGGGGCCGTGTCTGGTTTGTGGACGCGGAGCTGTTCGCT                         GTGTATGTCCTGGTTGGAGCATGGCACACTTCCCCCTCTAACCTACGAACG
genomic: CTCGTCTTTCGCGGGGCCGTGTCTGGTTTGTGGACGCGGAGCTGTTCGCTgtgagttggt ... tattctgcagGTGTATGTCCTGGTTGGAGCATGGCACACTTCCCCCTCTAACCTACGAACG
EST: gi|18372056|gb|BJ203658.1|BJ203658
EST:     CTCGTCTTTCGCGGGGCCGTGTCTGGTTTGTGGACGCGGAGCTGTTCGCTGTGAGTT                   
genomic: CTCGTCTTTCGCGGGGCCGTGTCTGGTTTGTGGACGCGGAGCTGTTCGC-------Tgtgagttggt ... tatt
EST: gi|18372056|gb|BJ203658.1|BJ203658
EST:     CTCGTCTTTCGCGGGGCCGTGTCTGGTTTGTGGACGCGGAGCTGTTCGCTGTGAGTT                   
genomic: CTCGTCTTTCGCGGGGCCGTGTCTGGTTTGTGGACGCGGAGCTGTTCGC-------Tgtgagttggt ... tatt

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TCGTGGTTGCGGAGCTCGGACCTCGGCGAGGCGACGCGCTGAAGCTTTGCCTCGTCTTTCGCGGGGCCGTGTCTGGTTTGTGGACGCGGAGCTGTTCGCTgtgagttggtcggtttgtctttcgctcgctcggtcgtttggttcttcgtctcgtttcaccaggagagaatgctgcggtgttgcagtggcgttgggcgagt

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT