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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGGCGCGGGGAAACGCTTCGTGAAAGCATTAAACGACACGAGCATTTTCTGGCTTTGCATCTTCATTTGAAACCAGGAATGAAGgtagcattttgttgctgtgtcgtgaatgctgtcgatagtgcgggtaacaggcgtgagcaggttgtatcgtggttgagtgcttgtggtggggtgggtactc...

Basic information

species Physcomitrella patens
transcript PP1S505_2V6.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S505_2V6.1 (Physcomitrella patens), 5'ss of exon 5
lower sequence: GRMZM2G122810_T02 (Zea mays), 5'ss of exon 5
ATGGCGCGGGGAAACGCTTCGTGAAAGCATTAAACGACACGAGCATTTTCTGGCTTTGCATCTTCATTTGAAACCAGGAATGAAGgt-agcatt-ttgttgctgtgtcgtgaatgctg-tcgatagtgcgggtaacaggcgtgag-caggttgtatcgtggttgagtgcttgtggtggggtgggtactc
||||   || ||| |  | ||||||||||| || ||||| ||||||||||| ||  |||| |||  ||||||||||||||||||||| ||  || |||||    | |  |  |   || |   |  |||   ||||   |  ||| |  |  || || |   | |     ||| |              
ATGGAATGGAGAATCCTTACGTGAAAGCATCAAGCGACATGAGCATTTTCTTGCCCTGCAACTTGGTTTGAAACCAGGAATGAAGgtcagttttcttgttaaaatttaattcacagtggttcttcttgctcttaactaacaagaggcgtgccgtttcat---ttatcaactgtag--------------