Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACGCAAAGGTTGTGGCAACACGTTTACTGAGAAGGATAACCACCAAGAAGCTTGCAATTATCACCCTGGCCCTGCGGTGTTTCACGATCGACTTAGAGGGgtatgatattgcatctaatttgtaagttgccttcaattgtgttcatattcttcttcacaatctgagtcttgagatgacaattcatatttcttttgtttttgtgcag

Basic information

species Physcomitrella patens
transcript PP1S505_16V6.1
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208374740|gb|DC948684.1|DC948684
EST:     CTTGCAATTATCACCCTGGCCCTGCGGTGTTTCACGATCGACTTAGAGGG                         TGGAAATGTTGTGATGTGCATGTAAAAGAATTTGATGAGTTCCTGGAAATA
genomic: CTTGCAATTATCACCCTGGCCCTGCGGTGTTTCACGATCGACTTAGAGGGgtatgatatt ... ttttgtgcagTGGAAATGTTGTGATGTGCATGTAAAAGAATTTGATGAGTTCCTGGAAATA
EST: gi|18338838|gb|BJ170863.1|BJ170863
EST:     CTTGCAATTATCACCCTGGCCCTGCGGTGTTTCACGATCGACTTAGAGGG                         TGGAAATGTTGTGATGTGCATGTAAAAGAATTTGATGAGTTCCTGGAAATA
genomic: CTTGCAATTATCACCCTGGCCCTGCGGTGTTTCACGATCGACTTAGAGGGgtatgatatt ... ttttgtgcagTGGAAATGTTGTGATGTGCATGTAAAAGAATTTGATGAGTTCCTGGAAATA
EST: gi|208367662|gb|DC955007.1|DC955007
EST:     CTTGCAATTATCACCCTGGCCCTGCGGTGTTTCACGATCGACTTAGAGGG                         TGGAAATGTTGTGATGTGCATGTAAAAGAATTTGATGAGTTCCTGGAAATA
genomic: CTTGCAATTATCACCCTGGCCCTGCGGTGTTTCACGATCGACTTAGAGGGgtatgatatt ... ttttgtgcagTGGAAATGTTGTGATGTGCATGTAAAAGAATTTGATGAGTTCCTGGAAATA
EST: gi|208394738|gb|DC924069.1|DC924069
EST:     CTTGCAATTATCACCCTGGCCCTGCGGTGTTTCACGATCGACTTAGAGGG                         TGGAAATGTTGTGATGTGCATGTAAAAGAATTTGATGAGTTCCTGGAAATA
genomic: CTTGCAATTATCACCCTGGCCCTGCGGTGTTTCACGATCGACTTAGAGGGgtatgatatt ... ttttgtgcagTGGAAATGTTGTGATGTGCATGTAAAAGAATTTGATGAGTTCCTGGAAATA