1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
gtacggaattgaaatgcttgactcttgtttttttttaacttaagttgcattggattgtttcttggtagcatgaatcaccctagtggtagccaattgtcgtcgtgataattttatttgcttcattctacacggagttgacaagtgttgaggttgtatggggtgtagGTATGAGGAGGCTAGTCATGAAGCCACAATGGCCCAAGGAAGGGAAGATTTCAGTGATTTGGTTGCTGAG
species | Physcomitrella patens |
transcript | PP1S505_13V6.1 |
intron # | 16 |
splice site | 3' |
intron type | U2 |
EST: CTCCGACCTGAGGAGTTGGAAGGTCTTGATGATGTAGCCCTCGCAGCCAA GTATGAGGAGGCTAGTCATGAAGCCACAATGGCCCAAGGAAGGGAAGATTTEST: gi|162180937|gb|FC358591.1|FC358591
genomic: CTCCGACCTGAGGAGTTGGAAGGTCTTGATGATGTAGCCCTCGCAGCCAAgtacggaatt ... tggggtgtagGTATGAGGAGGCTAGTCATGAAGCCACAATGGCCCAAGGAAGGGAAGATTT
EST: CTCCGACCTGAGGAGTTGGAAGGTCTTGATGATGTAGCCCTCGCAGCCAA GTATGAGGAGGCTAGTCATGAAGCCACAATGGCCCAAGGAAGGGAAGATTTEST: gi|162264383|gb|FC440549.1|FC440549
genomic: CTCCGACCTGAGGAGTTGGAAGGTCTTGATGATGTAGCCCTCGCAGCCAAgtacggaatt ... tggggtgtagGTATGAGGAGGCTAGTCATGAAGCCACAATGGCCCAAGGAAGGGAAGATTT
EST: CTCCGACCTGAGGAGTTGGAAGGTCTTGATGATGTAGCCCTCGCAGCCAA GTATGAGGAGGCTAGTCATGAAGCCACAATGGCCCAAGGAAGGGAAGATTT
genomic: CTCCGACCTGAGGAGTTGGAAGGTCTTGATGATGTAGCCCTCGCAGCCAAgtacggaatt ... tggggtgtagGTATGAGGAGGCTAGTCATGAAGCCACAATGGCCCAAGGAAGGGAAGATTT
ttatttgcttcattctacacggagttgacaagtgttgaggttgtatggggtgtagGTATGAGGAGGCTAGTCATGAAGCCACAATGGCCCAAGGAAGGGAAGATTTCAGTGATTTGGTTGCTGAG
agttgac putative branch site (score: 4)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacggaattgaaatgcttgactcttgtttttttttaacttaagttgcattggattgtttcttggtagcatgaatcaccctagtggtagccaattgtcgtcgtgataattttatttgcttcattctacacggagttgacaagtgttgaggttgtatggggtgtagGTATGAGGAGGCTAGTCATGAAGCCACAATGGCCCAAGGAAGGGAAGATTTCAGTGATTTGGTTGCTGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA