Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|100391326|gb|BY971601.1|BY971601EST: TTGCTCCGCATGTGGAGACCGTCCAGAAGACCGTGAGTCCCTATGCCGAG GCTGCCAAGGAGAAGAGCAAGCCCTATGTCGACAAGGCATCGACGTTTGCT
genomic: TTGCTCCGCATGTGGAGACCGTCCAGAAGACCGTGAGTCCCTATGCCGAGgtatgagcct ... tctcaaacagGCTGCCAAGGAGAAGAGCAAGCCCTATGTCGACAAGGCATCGACGTTTGCT
EST:
gi|162263868|gb|FC439176.1|FC439176EST: TTGCTCCGCATGTGGAGACCGTCCAGAAGACCGTGAGTCCCTATGCCGAG GCTGCCAAGGAGAAGAGCAAGCCCTATGTCGACAAGGCATCGACGTTTGCT
genomic: TTGCTCCGCATGTGGAGACCGTCCAGAAGACCGTGAGTCCCTATGCCGAGgtatgagcct ... tctcaaacagGCTGCCAAGGAGAAGAGCAAGCCCTATGTCGACAAGGCATCGACGTTTGCT
EST:
gi|161981699|gb|EE296065.1|EE296065EST: TTGCTCCGCATGTGGAGACCGTCCAGAAGACCGTGAGTCCCTATGCCGAG GCTGNCCAAGGAGAAGAGCAAGCCCTATGTCGACAAGGNATCGACGTTTGC
genomic: TTGCTCCGCATGTGGAGACCGTCCAGAAGACCGTGAGTCCCTATGCCGAGgtatgagcct ... tctcaaacagGCTG-CCAAGGAGAAGAGCAAGCCCTATGTCGACAAGGCATCGACGTTTGC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttcccgagtcagtttagggtttctaaccatgtattgacgtgggtttctcaaacagGCTGCCAAGGAGAAGAGCAAGCCCTATGTCGACAAGGCATCGACGTTTGCTGCTCCTCATTTGGAGAGATTAAACACCCTGGCAGGTCCTCACTACCGCC
tttctc CT-rich tract
tttctaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtatgagccttcaccaatactcccatttgatcgtctcctgtcctgtttttcccgagtcagtttagggtttctaaccatgtattgacgtgggtttctcaaacagGCTGCCAAGGAGAAGAGCAAGCCCTATGTCGACAAGGCATCGACGTTTGCTGCTCCTCATTTGGAGAGATTAAACACCCTGGCAGGTCCTCACTACCGCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA