1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...tgatgattacagtcctttgggcaatttgattagttcacgtgcatgtggttttgcttcgccctgctgagtttagtaatccatcctatgtccatatctgcagACCTTCCGGGTTGCAACGGATATCGTAGTCACTGTTCCGTGAGAGTTCGAGCCTCTCAGCCAAGTCTCGAGGCTGTCCCGGTCCCTGCAGGATATCAAAC
species | Physcomitrella patens |
transcript | PP1S4_80V6.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TTCAAGGCTTGAGAGCGTCCGAGGTGCGGGAAGATTGGCATTCGGCAGGG ACCTTCCGGGTTGCAACGGATATCGTAGTCACTGTTCCGTGAGAGTTCGAGEST: gi|18360586|gb|BJ192649.1|BJ192649
genomic: TTCAAGGCTTGAGAGCGTCCGAGGTGCGGGAAAATTGGCATTCGGCAGGGgtaagtggta ... atatctgcagACCTTCCGGGTTGCAACGGATATCGTAGTCACTGTTCCGTGAGAGTTCGAG
EST: TTCAAGGCTTGAGAGCGTCCGAGGTGCGGGAAAATTGGCATTCGGCAGGG ACCTTCCGGGTTGCAACGGATATCGTAGTCACTGTTCCGTGAGAGTTCGAGEST: gi|162279530|gb|FC455321.1|FC455321
genomic: TTCAAGGCTTGAGAGCGTCCGAGGTGCGGGAAAATTGGCATTCGGCAGGGgtaagtggta ... atatctgcagACCTTCCGGGTTGCAACGGATATCGTAGTCACTGTTCCGTGAGAGTTCGAG
EST: TTCAAGGCTTGAGAGCGTCCGAGGTGCGGGAAAATTGGCATTCGGCAGGGGTAAGTGEST: gi|208379109|gb|DC911634.1|DC911634
genomic: TTCAAGGCTTGAGAGCGTCCGAGGTGCGGGAAAATTGGCATTCGGCA---G---G-Ggtaagtggta ... atat
EST: TTCAAGGCTTGAGAGCGTCCGAGGTGCGGGAAAATTGGCATTCGGCAGGG ACCTTCCGGGTTGCAACGGATATCGTAGTCACTGTTCCGTGAGAGTTCGAGEST: gi|18364000|gb|BJ196073.1|BJ196073
genomic: TTCAAGGCTTGAGAGCGTCCGAGGTGCGGGAAAATTGGCATTCGGCAGGGgtaagtggta ... atatctgcagACCTTCCGGGTTGCAACGGATATCGTAGTCACTGTTCCGTGAGAGTTCGAG
EST: TTCAAGGCTTGAGAGCGTCCGAGGTGCGGGAAAATTGGCATTCGGCAGGG ACCTTCCGGGTTGCAACGGATATCGTAGTCACTGTTCCGTGAGAGTTCGAGEST: gi|208344682|gb|DC905131.1|DC905131
genomic: TTCAAGGCTTGAGAGCGTCCGAGGTGCGGGAAAATTGGCATTCGGCAGGGgtaagtggta ... atatctgcagACCTTCCGGGTTGCAACGGATATCGTAGTCACTGTTCCGTGAGAGTTCGAG
EST: TTCAAGGCTTGAGAGCGTCCGAGGTGCGGGAAAATTGGCATTCGGCAGGG ACCTTCCGGGTTGCAACGGATATCGTAGTCACTGTTCCGTGAGAGTTCGAGEST: gi|208376190|gb|DC911014.1|DC911014
genomic: TTCAAGGCTTGAGAGCGTCCGAGGTGCGGGAAAATTGGCATTCGGCAGGGgtaagtggta ... atatctgcagACCTTCCGGGTTGCAACGGATATCGTAGTCACTGTTCCGTGAGAGTTCGAG
EST: TTCAAGGCTTGAGAGCGTCCGAGGTGCGGGAAAATTGGCATTCGGCAGGG ACCTTCCGGGTTGCAACGGATATCGTAGTCACTGTTCCGTGAGAGTTCGAGEST: gi|162258991|gb|FC435934.1|FC435934
genomic: TTCAAGGCTTGAGAGCGTCCGAGGTGCGGGAAAATTGGCATTCGGCAGGGgtaagtggta ... atatctgcagACCTTCCGGGTTGCAACGGATATCGTAGTCACTGTTCCGTGAGAGTTCGAG
EST: TTCAAGGCTTGAGAGCGTCCGAGGTGCGGGAAAATTGGCATTCGGCAGGG ACCTTCCGGGTTGCAACGGATATCGTAGTCACTGTTCCGTGAGAGTTCGAG
genomic: TTCAAGGCTTGAGAGCGTCCGAGGTGCGGGAAAATTGGCATTCGGCAGGGgtaagtggta ... atatctgcagACCTTCCGGGTTGCAACGGATATCGTAGTCACTGTTCCGTGAGAGTTCGAG
tggttttgcttcgccctgctgagtttagtaatccatcctatgtccatatctgcagACCTTCCGGGTTGCAACGGATATCGTAGTCACTGTTCCGTGAGAGTTCGAGCCTCTCAGCCAAGTCTCGAGGCTGTCCCGGTCCCTGCAGGATATCAAAC
tttagtaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgatgattacagtcctttgggcaatttgattagttcacgtgcatgtggttttgcttcgccctgctgagtttagtaatccatcctatgtccatatctgcagACCTTCCGGGTTGCAACGGATATCGTAGTCACTGTTCCGTGAGAGTTCGAGCCTCTCAGCCAAGTCTCGAGGCTGTCCCGGTCCCTGCAGGATATCAAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG