1 5' 3' | 2 5' 3' | 3 5' 3' |
...agtgtgtattgaatattccaagacaaaaaaaatatcgcgttcttgaacccttgaacttaagagtgcagaataacagccattgtctgtgtgatttgaacagGTTGTAGGTTGGAGGCTTGTGAATCTGGGCTCAAGCGAAGCAGGGCTTAAGCTCCAGTGCGATTGGCTTTTGAAAGATGCGGTTTCCGTGACTGAATTGA
species | Physcomitrella patens |
transcript | PP1S4_75V6.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AGAATACAGCTCCCATGACTGAGGGTGAGGCGAAGGCTTTACTCCGCAAG GTTGTAGGTTGGAGGCTTGTGAATCTGGGCTCAAGCGAAGCAGGGCTTAAGEST: gi|67572953|gb|BJ945777.1|BJ945777
genomic: AGAATACAGCTCCCATGACTGAGGGTGAGGCGAAGGCTTTACTCCGCAAGgtagtttgat ... atttgaacagGTTGTAGGTTGGAGGCTTGTGAATCTGGGCTCAAGCGAAGCAGGGCTTAAG
EST: AGAATACAGCTCCCATGACTGAGGGTGAGGCGAAGGCTTTACTCCGCAAG GTTGTAGGTTGGAGGCTTGTGAATCTGGGCTCAAGCGAAGCAGGGCTTAAGEST: gi|162223589|gb|FC399713.1|FC399713
genomic: AGAATACAGCTCCCATGACTGAGGGTGAGGCGAAGGCTTTACTCCGCAAGgtagtttgat ... atttgaacagGTTGTAGGTTGGAGGCTTGTGAATCTGGGCTCAAGCGAAGCAGGGCTTAAG
EST: AGAATACAGCTCCCATGACTGAGGGTGAGGCGAAGGCTTTACTCCGCAAG GTTGTAGGTTGGAGGCTTGTGAATCTGGGCTCAAGCGAAGCAGGGCTTAAGEST: gi|18351485|gb|BJ183537.1|BJ183537
genomic: AGAATACAGCTCCCATGACTGAGGGTGAGGCGAAGGCTTTACTCCGCAAGgtagtttgat ... atttgaacagGTTGTAGGTTGGAGGCTTGTGAATCTGGGCTCAAGCGAAGCAGGGCTTAAG
EST: AGAATACAGCTCCCATGACTGAGGGTGAGGCGAAGGCTTTACTCCGCAAG GTTGTAGGTTGGAGGCTTGTGAATCTGGGCTCAAGCGAAGCAGGGCTTAAGEST: gi|18365447|gb|BJ197523.1|BJ197523
genomic: AGAATACAGCTCCCATGACTGAGGGTGAGGCGAAGGCTTTACTCCGCAAGgtagtttgat ... atttgaacagGTTGTAGGTTGGAGGCTTGTGAATCTGGGCTCAAGCGAAGCAGGGCTTAAG
EST: AGAATACAGCTCCCATGACTGAGGGTGAGGCGAAGGCTTTACTCCGCAAG GTTGTAGGTTGGAGGCTTGTGAATCTGGGCTCAAGCGAAGCAGGGCTTAAGEST: gi|162228292|gb|FC404371.1|FC404371
genomic: AGAATACAGCTCCCATGACTGAGGGTGAGGCGAAGGCTTTACTCCGCAAGgtagtttgat ... atttgaacagGTTGTAGGTTGGAGGCTTGTGAATCTGGGCTCAAGCGAAGCAGGGCTTAAG
EST: GGTGAGGCGAAGGCTTTACTCCGCAAG GTTGTAGGTTGGAGGCTTGTGAATCTGGGCTCAAGCGAAGCAGGGCTTAAGEST: gi|162172794|gb|FC348383.1|FC348383
genomic: GGTGAGGCGAAGGCTTTACTCCGCAAGgtagtttgat ... atttgaacagGTTGTAGGTTGGAGGCTTGTGAATCTGGGCTCAAGCGAAGCAGGGCTTAAG
EST: AGAATACAGCTCCCATGACTGAGGGTGAGGCGAAGGCTTTACTCCGCAAG GTTGTAGGTTGGAGGCTTGTGAATCTGGGCTCAAGCGAAGCAGGGCTTAAGEST: gi|37845568|gb|BJ603576.1|BJ603576
genomic: AGAATACAGCTCCCATGACTGAGGGTGAGGCGAAGGCTTTACTCCGCAAGgtagtttgat ... atttgaacagGTTGTAGGTTGGAGGCTTGTGAATCTGGGCTCAAGCGAAGCAGGGCTTAAG
EST: AGAATACAGCTCCCATGACTGAGGGTGAGGCGAAGGCTTTACTCCGCAAG GTTGTAGGTTGGAGGCTTGTGAATCTGGGCTCAAGCGAAGCAGGGCTTAAGEST: gi|15327270|gb|BI487856.1|BI487856
genomic: AGAATACAGCTCCCATGACTGAGGGTGAGGCGAAGGCTTTACTCCGCAAGgtagtttgat ... atttgaacagGTTGTAGGTTGGAGGCTTGTGAATCTGGGCTCAAGCGAAGCAGGGCTTAAG
EST: AGAATACAGCTCCCATGACTGAGGGTGAGGCGAAGGCTTTACTCCGCAAG GTTGTAGGTTGGAGGCTTGTGAATCTGGGCTCAAGCGAAGCAGGGCTTAAGEST: gi|37839637|gb|BJ597645.1|BJ597645
genomic: AGAATACAGCTCCCATGACTGAGGGTGAGGCGAAGGCTTTACTCCGCAAGgtagtttgat ... atttgaacagGTTGTAGGTTGGAGGCTTGTGAATCTGGGCTCAAGCGAAGCAGGGCTTAAG
EST: AGAATACAGCTCCCATGACTGAGGGTGAGGCGAAGGCTTTACTCCGCAAG GTTGTAGGTTGGAGGCTTGTGAATCTGGGCTCAAGCGAAGCAGGGCTTAAGEST: gi|162172793|gb|FC348382.1|FC348382
genomic: AGAATACAGCTCCCATGACTGAGGGTGAGGCGAAGGCTTTACTCCGCAAGgtagtttgat ... atttgaacagGTTGTAGGTTGGAGGCTTGTGAATCTGGGCTCAAGCGAAGCAGGGCTTAAG
EST: AGAATCCAGTTCCCATGACTGAGGGTGAGGCGAAGGCTTTACTCCGCAAG GTTGTAGGTTGGAGGCTTGTGAATCTGGGCTCAAGCGAAGCAGGGCTTAAGEST: gi|162249183|gb|FC421227.1|FC421227
genomic: AGAATACAGCTCCCATGACTGAGGGTGAGGCGAAGGCTTTACTCCGCAAGgtagtttgat ... atttgaacagGTTGTAGGTTGGAGGCTTGTGAATCTGGGCTCAAGCGAAGCAGGGCTTAAG
EST: AGAATACAGCTCCCATGACTGAGGGTGAGGCGAAGGCTTTACTCCGCAAG GTTGTAGGTTGGAGGCTTGTGAATCTGGGCTCAAGCGAAGCAGGGCTTAAGEST: gi|67696335|gb|BJ956568.1|BJ956568
genomic: AGAATACAGCTCCCATGACTGAGGGTGAGGCGAAGGCTTTACTCCGCAAGgtagtttgat ... atttgaacagGTTGTAGGTTGGAGGCTTGTGAATCTGGGCTCAAGCGAAGCAGGGCTTAAG
EST: AGAATACAGCTCCCATGACTGAGGGTGAGGCGAAGGCTTTACTCCGCAAG GTTGTAGGTTGGAGGCTTGTGAATCTGGGCTCAAGCGAAGCAGGGCTTAAGEST: gi|162209382|gb|FC385497.1|FC385497
genomic: AGAATACAGCTCCCATGACTGAGGGTGAGGCGAAGGCTTTACTCCGCAAGgtagtttgat ... atttgaacagGTTGTAGGTTGGAGGCTTGTGAATCTGGGCTCAAGCGAAGCAGGGCTTAAG
EST: AGAATACAGCTCCCATGACTGAGGGTGAGGCGAAGGCTTTACTCCGCAAG GTTGTAGGTTGGAGGCTTGTGAATCTGGGCTCAAGCGAAGCAGGGCTTAAGEST: gi|162209383|gb|FC385498.1|FC385498
genomic: AGAATACAGCTCCCATGACTGAGGGTGAGGCGAAGGCTTTACTCCGCAAGgtagtttgat ... atttgaacagGTTGTAGGTTGGAGGCTTGTGAATCTGGGCTCAAGCGAAGCAGGGCTTAAG
EST: AGAATACAGCTCCCATGACTGAGGGTGAGGCGAAGGCTTTACTCCGCAAG GTTGTAGGTTGGAGGCTTGTGAATCTGGGCTCAAGCGAAGCAGGGCTTAAGEST: gi|162235543|gb|FC411340.1|FC411340
genomic: AGAATACAGCTCCCATGACTGAGGGTGAGGCGAAGGCTTTACTCCGCAAGgtagtttgat ... atttgaacagGTTGTAGGTTGGAGGCTTGTGAATCTGGGCTCAAGCGAAGCAGGGCTTAAG
EST: AGAATACAGCTCCCATGACTGAGGGTGAGGCGAAGGCTTTACTCCGCAAG GTTGTAGGTTGGAGGCTTGTGAATCTGGGCTCAAGCGAAGCAGGGCTTAAGEST: gi|37830831|gb|BJ588843.1|BJ588843
genomic: AGAATACAGCTCCCATGACTGAGGGTGAGGCGAAGGCTTTACTCCGCAAGgtagtttgat ... atttgaacagGTTGTAGGTTGGAGGCTTGTGAATCTGGGCTCAAGCGAAGCAGGGCTTAAG
EST: AGAATACAGCTCCCATGACTGAGGGTGAGGCGAAGGCTTTACTCCGCAAG GTTGTAGGTTGGAGGCTTGTGAATCTGGGCTCAAGCGAAGCAGGGCTTAAGEST: gi|162235544|gb|FC411341.1|FC411341
genomic: AGAATACAGCTCCCATGACTGAGGGTGAGGCGAAGGCTTTACTCCGCAAGgtagtttgat ... atttgaacagGTTGTAGGTTGGAGGCTTGTGAATCTGGGCTCAAGCGAAGCAGGGCTTAAG
EST: AGAATACAGCTCCCATGACTGAGGGTGAGGCGAAGGCTTTACTCCGCAAG GTTGTAGGTTGGAGGCTTGTGAATCTGGGCTCAAGCGAAGCAGGGCTTAAGEST: gi|162271170|gb|FC447159.1|FC447159
genomic: AGAATACAGCTCCCATGACTGAGGGTGAGGCGAAGGCTTTACTCCGCAAGgtagtttgat ... atttgaacagGTTGTAGGTTGGAGGCTTGTGAATCTGGGCTCAAGCGAAGCAGGGCTTAAG
EST: AGAATACAGCTCCCATGACTGAGGGTGAGGCGAAGGCTTTACTCCGCAAG GTTGTAGGTTGGAGGCTTGTGAATCTGGGCTCAAGCGAAGCAGGGCTTAAGEST: gi|162223590|gb|FC399714.1|FC399714
genomic: AGAATACAGCTCCCATGACTGAGGGTGAGGCGAAGGCTTTACTCCGCAAGgtagtttgat ... atttgaacagGTTGTAGGTTGGAGGCTTGTGAATCTGGGCTCAAGCGAAGCAGGGCTTAAG
EST: AGAATACAGCTCCCATGACTGAGGGTGAGGCGAAGGCTTTACTCCGCAAG GTTGTAGGTTGGAGGCTTGTGAATCTGGGCTCAAGCGAAGCAGGGCTTAAGEST: gi|162228293|gb|FC404372.1|FC404372
genomic: AGAATACAGCTCCCATGACTGAGGGTGAGGCGAAGGCTTTACTCCGCAAGgtagtttgat ... atttgaacagGTTGTAGGTTGGAGGCTTGTGAATCTGGGCTCAAGCGAAGCAGGGCTTAAG
EST: GGTGAGGCGAAGGCTTTACTCCGCAAG GTTGTAGGTTGGAGGCTTGTGAATCTGGGCTCAAGCGAAGCAGGGCTTAAGEST: gi|37852014|gb|BJ610022.1|BJ610022
genomic: GGTGAGGCGAAGGCTTTACTCCGCAAGgtagtttgat ... atttgaacagGTTGTAGGTTGGAGGCTTGTGAATCTGGGCTCAAGCGAAGCAGGGCTTAAG
EST: AGAATACAGCTCCCATGACTGAGGGTGAGGCGAAGGCTTTACTCCGCAAG GTTGTAGGTTGGAGGCTTGTGAATCTGGGCTCAAGCGAAGCAGGGCTTAAGEST: gi|162259933|gb|FC435236.1|FC435236
genomic: AGAATACAGCTCCCATGACTGAGGGTGAGGCGAAGGCTTTACTCCGCAAGgtagtttgat ... atttgaacagGTTGTAGGTTGGAGGCTTGTGAATCTGGGCTCAAGCGAAGCAGGGCTTAAG
EST: AGAATACAGCTCCCATGACTGAGGGTGAGGCGAAGGCTTTACTCCGCAAG GTTGTAGGTTGGAGGCTTGTGAATCTGGGCTCAAGCGAAGCAGGGCTTAAGEST: gi|18362341|gb|BJ194411.1|BJ194411
genomic: AGAATACAGCTCCCATGACTGAGGGTGAGGCGAAGGCTTTACTCCGCAAGgtagtttgat ... atttgaacagGTTGTAGGTTGGAGGCTTGTGAATCTGGGCTCAAGCGAAGCAGGGCTTAAG
EST: AGAATACAGCTCCCATGACTGAGGGTGAGGCGAAGGCTTTACTCCGCAAG GTTGTAGGTTGGAGGCTTGTGAATCTGGGCTCAAGCGAAGCAGGGCTTAAGEST: gi|162210449|gb|FC386537.1|FC386537
genomic: AGAATACAGCTCCCATGACTGAGGGTGAGGCGAAGGCTTTACTCCGCAAGgtagtttgat ... atttgaacagGTTGTAGGTTGGAGGCTTGTGAATCTGGGCTCAAGCGAAGCAGGGCTTAAG
EST: AGAATACAGCTCCCATGACTGAGGGTGAGGCGAAGGCTTTACTCCGCAAG GTTGTAGGTTGGAGGCTTGTGAATCTGGGCTCAAGCGAAGCAGGGCTTAAGEST: gi|19778834|gb|BQ039368.1|BQ039368
genomic: AGAATACAGCTCCCATGACTGAGGGTGAGGCGAAGGCTTTACTCCGCAAGgtagtttgat ... atttgaacagGTTGTAGGTTGGAGGCTTGTGAATCTGGGCTCAAGCGAAGCAGGGCTTAAG
EST: AGAATACAGCTCCCATGACTGAGGGTGAGGCGAAGGCTTTACTCCGCAAG GTTGTAGGTTGGAGGCTTGTGAATCTGGGCTCAAGCGAAGCAGGGCTTAAGEST: gi|162228470|gb|FC404120.1|FC404120
genomic: AGAATACAGCTCCCATGACTGAGGGTGAGGCGAAGGCTTTACTCCGCAAGgtagtttgat ... atttgaacagGTTGTAGGTTGGAGGCTTGTGAATCTGGGCTCAAGCGAAGCAGGGCTTAAG
EST: AGAATACAGCTCCCATGACTGAGGGTGAGGCGAAGGCTTTACTCCGCAAG GTTGTAGGTTGGAGGCTTGTGAATCTGGGCTCAAGCGAAGCAGGGCTTAAGEST: gi|162258992|gb|FC435935.1|FC435935
genomic: AGAATACAGCTCCCATGACTGAGGGTGAGGCGAAGGCTTTACTCCGCAAGgtagtttgat ... atttgaacagGTTGTAGGTTGGAGGCTTGTGAATCTGGGCTCAAGCGAAGCAGGGCTTAAG
EST: AGAATACAGCTCCCATGACTGAGGGTGAGGGGAAGGCTTTATTCCGCAAG GTTGTAGGTTGGAGGCTTGTGAATCTGGGCTCAAGCGAAGCAGGGCTTAAGEST: gi|67578157|gb|BJ950324.1|BJ950324
genomic: AGAATACAGCTCCCATGACTGAGGGTGAGGCGAAGGCTTTACTCCGCAAGgtagtttgat ... atttgaacagGTTGTAGGTTGGAGGCTTGTGAATCTGGGCTCAAGCGAAGCAGGGCTTAAG
EST: AGAATACAGCTCCCATGACTGAGGGTGAGGCGAAGGCTTTACTCCGCAAG GTTGTAGGTTGGAGGCTTGTGAATCTGGGCTCAAGCGAAGCAGGGCTTAAGEST: gi|162259934|gb|FC435237.1|FC435237
genomic: AGAATACAGCTCCCATGACTGAGGGTGAGGCGAAGGCTTTACTCCGCAAGgtagtttgat ... atttgaacagGTTGTAGGTTGGAGGCTTGTGAATCTGGGCTCAAGCGAAGCAGGGCTTAAG
EST: AGAATACAGCTCCCATGACTGAGGGTGAGGCGAAGGCTTTACTCCGCAAG GTTGTAGGTTGGAGGCTTGTGAATCTGGGCTCAAGCGAAGCAGGGCTTAAGEST: gi|67698062|gb|BJ958295.1|BJ958295
genomic: AGAATACAGCTCCCATGACTGAGGGTGAGGCGAAGGCTTTACTCCGCAAGgtagtttgat ... atttgaacagGTTGTAGGTTGGAGGCTTGTGAATCTGGGCTCAAGCGAAGCAGGGCTTAAG
EST: AGAATACAGCTCCCATGACTGAGGGTGAGGCGAAGGCTTTACTCCGCAAG GTTGTAGGTTGGAGGCTTGTGAATCTGGGCTCAAGCGAAGCAGGGCTTAAGEST: gi|100444457|gb|BY964155.1|BY964155
genomic: AGAATACAGCTCCCATGACTGAGGGTGAGGCGAAGGCTTTACTCCGCAAGgtagtttgat ... atttgaacagGTTGTAGGTTGGAGGCTTGTGAATCTGGGCTCAAGCGAAGCAGGGCTTAAG
EST: AGAATACAGCTCCCATGACTGAGGGTGAGGCGAAGGCTTTACTCCGCAAG GTTGTAGGTTGGAGGCTTGTGAATCTGGGCTCAAGCGAAGCAGGGCTTAAGEST: gi|162271171|gb|FC447160.1|FC447160
genomic: AGAATACAGCTCCCATGACTGAGGGTGAGGCGAAGGCTTTACTCCGCAAGgtagtttgat ... atttgaacagGTTGTAGGTTGGAGGCTTGTGAATCTGGGCTCAAGCGAAGCAGGGCTTAAG
EST: AGAATACAGCTCCCATGACTGAGGGTGAGGCGAAGGCTTTACTCCGCAAG GTTGTAGGTTGGAGGCTTGTGAATCTGGGCTCAAGCGAAGCAGGGCTTAAGEST: gi|162245153|gb|FC421601.1|FC421601
genomic: AGAATACAGCTCCCATGACTGAGGGTGAGGCGAAGGCTTTACTCCGCAAGgtagtttgat ... atttgaacagGTTGTAGGTTGGAGGCTTGTGAATCTGGGCTCAAGCGAAGCAGGGCTTAAG
EST: AGAATACAGCTCCCATGACTGAGGGTGAGGCGAAGGCTTTACTCCGCAAG GTTGTAGGTTGGAGGCTTGTGAATCTGGGCTCAAGCGAAGCAGGGCTTAAGEST: gi|162213088|gb|FC389512.1|FC389512
genomic: AGAATACAGCTCCCATGACTGAGGGTGAGGCGAAGGCTTTACTCCGCAAGgtagtttgat ... atttgaacagGTTGTAGGTTGGAGGCTTGTGAATCTGGGCTCAAGCGAAGCAGGGCTTAAG
EST: AGAATACAGCTCCCATGACTGAGGGTGAGGCGAAGGCTTTACTCCGCAAG GTTGTAGGTTGGAGGCTTGTGAATCTGGGCTCAAGCGAAGCAGGGCTTAAGEST: gi|162258993|gb|FC435936.1|FC435936
genomic: AGAATACAGCTCCCATGACTGAGGGTGAGGCGAAGGCTTTACTCCGCAAGgtagtttgat ... atttgaacagGTTGTAGGTTGGAGGCTTGTGAATCTGGGCTCAAGCGAAGCAGGGCTTAAG
EST: AGAATACAGCTCCCATGACTGAGGGTGAGGCGAAGGCTTTACTCCGCAAG GTTGTAGGTTGGAGGCTTGTGAATCTGGGCTCAAGCGAAGCAGGGCTTAAGEST: gi|67574646|gb|BJ947470.1|BJ947470
genomic: AGAATACAGCTCCCATGACTGAGGGTGAGGCGAAGGCTTTACTCCGCAAGgtagtttgat ... atttgaacagGTTGTAGGTTGGAGGCTTGTGAATCTGGGCTCAAGCGAAGCAGGGCTTAAG
EST: AGAATACAGCTCCCATGACTGAGGGTGAGGCGAAGGCTTTACTCCGCAAG GTTGTAGGTTGGAGGCTTGTGAATCTGGGCTCAAGCGAAGCAGGGCTTAAG
genomic: AGAATACAGCTCCCATGACTGAGGGTGAGGCGAAGGCTTTACTCCGCAAGgtagtttgat ... atttgaacagGTTGTAGGTTGGAGGCTTGTGAATCTGGGCTCAAGCGAAGCAGGGCTTAAG
aacccttgaacttaagagtgcagaataacagccattgtctgtgtgatttgaacagGTTGTAGGTTGGAGGCTTGTGAATCTGGGCTCAAGCGAAGCAGGGCTTAAGCTCCAGTGCGATTGGCTTTTGAAAGATGCGGTTTCCGTGACTGAATTGA
gaataac putative branch site (score: 46)
aacttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agtgtgtattgaatattccaagacaaaaaaaatatcgcgttcttgaacccttgaacttaagagtgcagaataacagccattgtctgtgtgatttgaacagGTTGTAGGTTGGAGGCTTGTGAATCTGGGCTCAAGCGAAGCAGGGCTTAAGCTCCAGTGCGATTGGCTTTTGAAAGATGCGGTTTCCGTGACTGAATTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG