1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...tcctaccagtgtgttgattcgcaccattaagtcgccttagtgttgtcttcttcgctgataacgtaaagcttactattccttgatgtattttggacagcagTTTATCAGTGCCGATCCCTTCGGTCAGCACAAGTGCGTCAAGTTATGGAGCATTTTTGGGATTATCAGGGAACATGAGGTATCAGCTAGTTAACGGAGCG
species | Physcomitrella patens |
transcript | PP1S4_62V6.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TCTGCTGGAGCGGGCCTAGCCAGTCTCATGCCATCGGCAAGAAAAGAAGACAEST: gi|162257914|gb|FC433800.1|FC433800
genomic: TCTGCTGGAGCGGGCCTAGCCAGTCTCATGCCATCGGCAAGAAAAGAAG--Agtatgctacc ... tggacagca
EST: TCTGCTGGAGCGGGCCTAGCCAGTCTCATGCCATCGGCAAGAAAAGAAGACAEST: gi|162161404|gb|FC337610.1|FC337610
genomic: TCTGCTGGAGCGGGCCTAGCCAGTCTCATGCCATCGGCAAGAAAAGAAG--Agtatgctacc ... tggacagca
EST: TCTGCTGGAGCGGGCCTAGCCAGTCTCATGCCATCGGCAAGAAAAGAAGA TTTATCAGTGCCGATCCCTTCGGTCAGCACAAGTGCGTCAAGTTATGGAGCEST: gi|7147966|gb|AW509888.1|AW509888
genomic: TCTGCTGGAGCGGGCCTAGCCAGTCTCATGCCATCGGCAAGAAAAGAAGAgtatgctacc ... tggacagcagTTTATCAGTGCCGATCCCTTCGGTCAGCACAAGTGCGTCAAGTTATGGAGC
EST: TCTGCTGGAGCGGGCCTAGCCAGTCTCATGCCATCGGCAAGAAAAGAAGA TTTATCAGTGCCGATCCCTTCGGTCAGCACAAGTGCGTCAAGTTATGGAGCEST: gi|162173147|gb|FC349227.1|FC349227
genomic: TCTGCTGGAGCGGGCCTAGCCAGTCTCATGCCATCGGCAAGAAAAGAAGAgtatgctacc ... tggacagcagTTTATCAGTGCCGATCCCTTCGGTCAGCACAAGTGCGTCAAGTTATGGAGC
EST: TCTGCTGGAGCGGGCCTAGCCAGTCTCATGCCATCGGCAAGAAAAGAAGA TTTATCAGTGCCGATCCCTTCGGTCAGCACAAGTGCGTCAAGTTATGGAGCEST: gi|162191494|gb|FC367185.1|FC367185
genomic: TCTGCTGGAGCGGGCCTAGCCAGTCTCATGCCATCGGCAAGAAAAGAAGAgtatgctacc ... tggacagcagTTTATCAGTGCCGATCCCTTCGGTCAGCACAAGTGCGTCAAGTTATGGAGC
EST: TCTGCTGGAGCGGGCCTAGCCAGTCTCATGCCATCGGCAAGAAAAGAAGA TTTATCAGTGCCGATCCCTTCGGTCAGCACAAGTGCGTCAAGTTATGGAGCEST: gi|162224069|gb|FC400635.1|FC400635
genomic: TCTGCTGGAGCGGGCCTAGCCAGTCTCATGCCATCGGCAAGAAAAGAAGAgtatgctacc ... tggacagcagTTTATCAGTGCCGATCCCTTCGGTCAGCACAAGTGCGTCAAGTTATGGAGC
EST: TCTGCTGGAGCGGGCCTAGCCAGTCTCATGCCATCGGCAAGAAAAGAAGA CEST: gi|162224069|gb|FC400635.1|FC400635
genomic: TCTGCTGGAGCGGGCCTAGCCAGTCTCATGCCATCGGCAAGAAAAGAAGAgtatgctacc ... tggacagcag-
EST: TCTGCTGGAGCGGGCCTAGCCAGTCTCATGCCATCGGCAAGAAAAGAAGA CEST: gi|162224069|gb|FC400635.1|FC400635
genomic: TCTGCTGGAGCGGGCCTAGCCAGTCTCATGCCATCGGCAAGAAAAGAAGAgtatgctacc ... tggacagcag-
EST: TCTGCTGGAGCGGGCCTAGCCAGTCTCATGCCATCGGCAAGAAAAGAAGA CEST: gi|162224069|gb|FC400635.1|FC400635
genomic: TCTGCTGGAGCGGGCCTAGCCAGTCTCATGCCATCGGCAAGAAAAGAAGAgtatgctacc ... tggacagcag-
EST: TCTGCTGGAGCGGGCCTAGCCAGTCTCATGCCATCGGCAAGAAAAGAAGA CEST: gi|162158306|gb|FC334725.1|FC334725
genomic: TCTGCTGGAGCGGGCCTAGCCAGTCTCATGCCATCGGCAAGAAAAGAAGAgtatgctacc ... tggacagcag-
EST: TCTGCTGGAGCGGGCCTAGCCAGTCTCATGCCATCGGCAAGAAAAGAAGA TTTATCAGTGCCGATCCCTTCGGTCAGCACAAGTGCGTCAAGTTATGGAGCEST: gi|162197210|gb|FC372523.1|FC372523
genomic: TCTGCTGGAGCGGGCCTAGCCAGTCTCATGCCATCGGCAAGAAAAGAAGAgtatgctacc ... tggacagcagTTTATCAGTGCCGATCCCTTCGGTCAGCACAAGTGCGTCAAGTTATGGAGC
EST: TCTGCTGGAGCGGGCCTAGCCAGTCTCATGCCATCGGCAAGAAAAGAAGA CEST: gi|162197210|gb|FC372523.1|FC372523
genomic: TCTGCTGGAGCGGGCCTAGCCAGTCTCATGCCATCGGCAAGAAAAGAAGAgtatgctacc ... tggacagcag-
EST: TCTGCTGGAGCGGGCCTAGCCAGTCTCATGCCATCGGCAAGAAAAGAAGA CEST: gi|162197210|gb|FC372523.1|FC372523
genomic: TCTGCTGGAGCGGGCCTAGCCAGTCTCATGCCATCGGCAAGAAAAGAAGAgtatgctacc ... tggacagcag-
EST: TCTGCTGGAGCGGGCCTAGCCAGTCTCATGCCATCGGCAAGAAAAGAAGA CEST: gi|162197210|gb|FC372523.1|FC372523
genomic: TCTGCTGGAGCGGGCCTAGCCAGTCTCATGCCATCGGCAAGAAAAGAAGAgtatgctacc ... tggacagcag-
EST: TCTGCTGGAGCGGGCCTAGCCAGTCTCATGCCATCGGCAAGAAAAGAAGA CEST: gi|162235385|gb|FC411520.1|FC411520
genomic: TCTGCTGGAGCGGGCCTAGCCAGTCTCATGCCATCGGCAAGAAAAGAAGAgtatgctacc ... tggacagcag-
EST: TCTGCTGGAGCGGGCCTAGCCAGTCTCATGCCATCGGCAAGAAAAGAAGA TTTATCAGTGCCGATCCCTTCGGTCAGCACAAGTGCGTCAAGTTATGGAGCEST: gi|162192881|gb|FC369875.1|FC369875
genomic: TCTGCTGGAGCGGGCCTAGCCAGTCTCATGCCATCGGCAAGAAAAGAAGAgtatgctacc ... tggacagcagTTTATCAGTGCCGATCCCTTCGGTCAGCACAAGTGCGTCAAGTTATGGAGC
EST: CTGCTGGAGCGGGCCTAGCCAGTCTCATGCCCATCG-CAAGAAAAGAAGA TTTATCAGTGCCGATCCCTTCGGTCAGCACAAGTGCGTCAAGTTATGGAGCEST: gi|162227026|gb|FC403370.1|FC403370
genomic: CTGCTGGAGCGGGCCTAGCCAGTCTCATGCC-ATCGGCAAGAAAAGAAGAgtatgctacc ... tggacagcagTTTATCAGTGCCGATCCCTTCGGTCAGCACAAGTGCGTCAAGTTATGGAGC
EST: TCTGCTGGAGCGGGCCTAGCCAGTCTCATGCCATCGGCAAGAAAAGAAGACAEST: gi|162227026|gb|FC403370.1|FC403370
genomic: TCTGCTGGAGCGGGCCTAGCCAGTCTCATGCCATCGGCAAGAAAAGAAG--Agtatgctacc ... tggacagca
EST: TCTGCTGGAGCGGGCCTAGCCAGTCTCATGCCATCGGCAAGAAAAGAAGACA
genomic: TCTGCTGGAGCGGGCCTAGCCAGTCTCATGCCATCGGCAAGAAAAGAAG--Agtatgctacc ... tggacagca
tcttcttcgctgataacgtaaagcttactattccttgatgtattttggacagcagTTTATCAGTGCCGATCCCTTCGGTCAGCACAAGTGCGTCAAGTTATGGAGCATTTTTGGGATTATCAGGGAACATGAGGTATCAGCTAGTTAACGGAGCG
atgtatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcctaccagtgtgttgattcgcaccattaagtcgccttagtgttgtcttcttcgctgataacgtaaagcttactattccttgatgtattttggacagcagTTTATCAGTGCCGATCCCTTCGGTCAGCACAAGTGCGTCAAGTTATGGAGCATTTTTGGGATTATCAGGGAACATGAGGTATCAGCTAGTTAACGGAGCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT