1 5' 3' | 2 5' 3' | 3 5' 3' |
CAGCACTAATCCGCTTTTCAAAAGAACGCGTCGCATGTTTAGTGCAGAGATTGTATCACCAAGAAAAGTTTTGGAGACGGGCGTCATAAGGAGAAAGCAGgttggtgtgacattctgcgagcataaaattgtgatgcctctcattctgtgtagaagtttccagctactttggaactcgtgttcatcgtgcaaagaaatatgatcttcgattctggccctctcatcattttgtttatcttggtatgtatag
species | Physcomitrella patens |
transcript | PP1S4_55V6.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TTGTATCACCAAGAAAAGTTTTGGAGACGGGCGTCATAAGGAGAAAGCAG ACTCTCAGAACGTTGCGCTCCATAGTCCAAGATTTCGATGCTGGTCGGAGCEST: gi|162177622|gb|FC353208.1|FC353208
genomic: TTGTATCACCAAGAAAAGTTTTGGAGACGGGCGTCATAAGGAGAAAGCAGgttggtgtga ... gtatgtatagACTCTCAGAACGTTGCGCTCCATAGTCCAAGATTTCGATGCTGGTCGGAGC
EST: TTGTATCACCAAGAAAAGTTTTGGAGACGGGCGTCATAAGGAGAAAGCAG ACTCTCAGAACGTTGCGCTCCATAGTCCAAGATTTCGATGCTGGTCGGAGCEST: gi|100356763|gb|BY965268.1|BY965268
genomic: TTGTATCACCAAGAAAAGTTTTGGAGACGGGCGTCATAAGGAGAAAGCAGgttggtgtga ... gtatgtatagACTCTCAGAACGTTGCGCTCCATAGTCCAAGATTTCGATGCTGGTCGGAGC
EST: TTGTATCACCAAGAAAAGTTTTGGAGACGGGCGTCATAAGGAGAAAGCAG ACTCTCAGAACGTTGCGCTCCATAGTCCAAGATTCCGATGCTGGTCGGAGCEST: gi|100397140|gb|BY972350.1|BY972350
genomic: TTGTATCACCAAGAAAAGTTTTGGAGACGGGCGTCATAAGGAGAAAGCAGgttggtgtga ... gtatgtatagACTCTCAGAACGTTGCGCTCCATAGTCCAAGATTTCGATGCTGGTCGGAGC
EST: TTGTATCACCAAGAAAAGTTTTGGAGACGGGCGTCATAAGGAGAAAGCAG ACTCTCAGAACGTTGCGCTCCATAGTCCAAGATTTCGATGCTGGTCGGAGCEST: gi|100373622|gb|BY967750.1|BY967750
genomic: TTGTATCACCAAGAAAAGTTTTGGAGACGGGCGTCATAAGGAGAAAGCAGgttggtgtga ... gtatgtatagACTCTCAGAACGTTGCGCTCCATAGTCCAAGATTTCGATGCTGGTCGGAGC
EST: TTGTATCACCAAGAAAAGTTTTGGAGACGGGCGTCATAAGGAGAAAGCAG ACTCTCAGAACGTTGCGCTCCATAGTCCAAGATTTCGATGCTGGTCGGAGC
genomic: TTGTATCACCAAGAAAAGTTTTGGAGACGGGCGTCATAAGGAGAAAGCAGgttggtgtga ... gtatgtatagACTCTCAGAACGTTGCGCTCCATAGTCCAAGATTTCGATGCTGGTCGGAGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAGCACTAATCCGCTTTTCAAAAGAACGCGTCGCATGTTTAGTGCAGAGATTGTATCACCAAGAAAAGTTTTGGAGACGGGCGTCATAAGGAGAAAGCAGgttggtgtgacattctgcgagcataaaattgtgatgcctctcattctgtgtagaagtttccagctactttggaactcgtgttcatcgtgcaaagaaatatgatcttcgattctggccctctcatcattttgtttatcttggtatgtatag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA