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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAGTCTCACGGACACTCAAGCCGTGCTAATTCTGGAGGCCGGCACTTCGCTCGGCGGCAGAATCAAACATATCACCGGTCTTGTACCATGGCCTGTTGAGgtgggtgttgaatgtggggtttccttggattttctgagtgttacacgtttcggttggttttgtggcggtaaattgatgcagtttgaacgagaaacgactt...

Basic information

species Physcomitrella patens
transcript PP1S4_491V6.2
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100425072|gb|BY976958.1|BY976958
EST:     TCGGCGGCAGAATCAAACATATCACCGGTCTTGTACCATGGCCTGTTGAG                         GTTGGGCCTGAATTTATCCACGGCACCATGAACTCATCTTTCAAAGATATC
genomic: TCGGCGGCAGAATCAAACATATCACCGGTCTTGTACCATGGCCTGTTGAGgtgggtgttg ... gatgatgtagGTTGGGCCTGAATTTATCCACGGCACCATGAACTCATCTTTCAAAGATATC
EST: gi|100362716|gb|BY947492.1|BY947492
EST:     TCGGCGGCAGAATCAAACATATCACCGGTCTTGTACCATGGCCTGTTGAG                         GTTGGGCCTGAATTTATCCACGGCACCATGAACTCATCTTTCAAAGATATC
genomic: TCGGCGGCAGAATCAAACATATCACCGGTCTTGTACCATGGCCTGTTGAGgtgggtgttg ... gatgatgtagGTTGGGCCTGAATTTATCCACGGCACCATGAACTCATCTTTCAAAGATATC